Creating a Segmentation App Including Including Visualization with Clara-Viz¶
This tutorial shows how to create an organ segmentation application for a PyTorch model that has been trained with MONAI, and visualize the segmentation and input images with Clara Viz integration.
# Create a virtual environment with Python 3.7. # Skip if you are already in a virtual environment. # (JupyterLab dropped its support for Python 3.6 since 2021-12-23. # See https://github.com/jupyterlab/jupyterlab/pull/11740) conda create -n monai python=3.7 pytorch torchvision jupyterlab cudatoolkit=11.1 -c pytorch -c conda-forge conda activate monai # Launch JupyterLab if you want to work on Jupyter Notebook jupyter-lab
Executing from Jupyter Notebook¶
- Creating a Segmentation App Including Visualization with MONAI Deploy App SDK
- Creating Operators and connecting them in Application class
- Executing app locally
- Packaging app