:github_url: https://github.com/Project-MONAI/MONAI .. _apps: Applications ============ .. currentmodule:: monai.apps `Datasets` ---------- .. autoclass:: MedNISTDataset :members: .. autoclass:: DecathlonDataset :members: .. autoclass:: TciaDataset :members: .. autoclass:: CrossValidation :members: `Clara MMARs` ------------- .. autofunction:: download_mmar .. autofunction:: load_from_mmar .. autodata:: monai.apps.MODEL_DESC :annotation: `Utilities` ----------- .. autofunction:: check_hash .. autofunction:: download_url .. autofunction:: extractall .. autofunction:: download_and_extract `Deepgrow` ---------- .. automodule:: monai.apps.deepgrow.dataset .. autofunction:: create_dataset .. automodule:: monai.apps.deepgrow.interaction .. autoclass:: Interaction :members: .. automodule:: monai.apps.deepgrow.transforms .. autoclass:: AddInitialSeedPointd :members: .. autoclass:: AddGuidanceSignald :members: .. autoclass:: AddRandomGuidanced :members: .. autoclass:: AddGuidanceFromPointsd :members: .. autoclass:: SpatialCropForegroundd :members: .. autoclass:: SpatialCropGuidanced :members: .. autoclass:: RestoreLabeld :members: .. autoclass:: ResizeGuidanced :members: .. autoclass:: FindDiscrepancyRegionsd :members: .. autoclass:: FindAllValidSlicesd :members: .. autoclass:: Fetch2DSliced :members: `Pathology` ----------- .. automodule:: monai.apps.pathology.inferers .. autoclass:: SlidingWindowHoVerNetInferer :members: .. automodule:: monai.apps.pathology.losses.hovernet_loss .. autoclass:: HoVerNetLoss :members: .. automodule:: monai.apps.pathology.metrics .. autoclass:: LesionFROC :members: .. automodule:: monai.apps.pathology.utils .. autofunction:: compute_multi_instance_mask .. autofunction:: compute_isolated_tumor_cells .. autoclass:: PathologyProbNMS :members: .. automodule:: monai.apps.pathology.transforms.stain.array .. autoclass:: ExtractHEStains :members: .. autoclass:: NormalizeHEStains :members: .. automodule:: monai.apps.pathology.transforms.stain.dictionary .. autoclass:: ExtractHEStainsd :members: .. autoclass:: NormalizeHEStainsd :members: .. automodule:: monai.apps.pathology.transforms.post.array .. autoclass:: GenerateSuccinctContour :members: .. autoclass:: GenerateInstanceContour :members: .. autoclass:: GenerateInstanceCentroid :members: .. autoclass:: GenerateInstanceType :members: .. autoclass:: Watershed :members: .. autoclass:: GenerateWatershedMask :members: .. autoclass:: GenerateInstanceBorder :members: .. autoclass:: GenerateDistanceMap :members: .. autoclass:: GenerateWatershedMarkers :members: .. autoclass:: HoVerNetNuclearTypePostProcessing :members: .. autoclass:: HoVerNetInstanceMapPostProcessing :members: .. automodule:: monai.apps.pathology.transforms.post.dictionary .. autoclass:: GenerateSuccinctContourd :members: .. autoclass:: GenerateInstanceContourd :members: .. autoclass:: GenerateInstanceCentroidd :members: .. autoclass:: GenerateInstanceTyped :members: .. autoclass:: Watershedd :members: .. autoclass:: GenerateWatershedMaskd :members: .. autoclass:: GenerateInstanceBorderd :members: .. autoclass:: GenerateDistanceMapd :members: .. autoclass:: GenerateWatershedMarkersd :members: .. autoclass:: HoVerNetInstanceMapPostProcessingd :members: .. autoclass:: HoVerNetNuclearTypePostProcessingd :members: `Detection` ----------- `Hard Negative Sampler` ~~~~~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.utils.hard_negative_sampler :members: `RetinaNet Network` ~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.networks.retinanet_network :members: `RetinaNet Detector` ~~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.networks.retinanet_detector :members: `Transforms` ~~~~~~~~~~~~ .. automodule:: monai.apps.detection.transforms.box_ops :members: .. automodule:: monai.apps.detection.transforms.array :members: .. automodule:: monai.apps.detection.transforms.dictionary :members: `Anchor` ~~~~~~~~ .. automodule:: monai.apps.detection.utils.anchor_utils :members: `Matcher` ~~~~~~~~~ .. automodule:: monai.apps.detection.utils.ATSS_matcher :members: `Box coder` ~~~~~~~~~~~ .. automodule:: monai.apps.detection.utils.box_coder :members: `Detection Utilities` ~~~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.utils.detector_utils :members: .. automodule:: monai.apps.detection.utils.predict_utils :members: `Inference box selector` ~~~~~~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.utils.box_selector :members: `Detection metrics` ~~~~~~~~~~~~~~~~~~~ .. automodule:: monai.apps.detection.metrics.coco :members: .. automodule:: monai.apps.detection.metrics.matching :members: `Reconstruction` ---------------- FastMRIReader ~~~~~~~~~~~~~ .. autoclass:: monai.apps.reconstruction.fastmri_reader.FastMRIReader :members: `ConvertToTensorComplex` ~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: monai.apps.reconstruction.complex_utils.convert_to_tensor_complex `ComplexAbs` ~~~~~~~~~~~~ .. autofunction:: monai.apps.reconstruction.complex_utils.complex_abs `RootSumOfSquares` ~~~~~~~~~~~~~~~~~~ .. autofunction:: monai.apps.reconstruction.mri_utils.root_sum_of_squares `ComplexMul` ~~~~~~~~~~~~ .. autofunction:: monai.apps.reconstruction.complex_utils.complex_mul `ComplexConj` ~~~~~~~~~~~~~ .. autofunction:: monai.apps.reconstruction.complex_utils.complex_conj `Auto3DSeg` ----------- .. automodule:: monai.apps.auto3dseg :members: :special-members: __call__ :imported-members: `nnUNet` -------- .. automodule:: monai.apps.nnunet.__main__ .. autoclass:: monai.apps.nnunet.nnUNetV2Runner :members: