Index

_

__call__() (monai.apps.auto3dseg.AlgoEnsemble method) (monai.apps.auto3dseg.OptunaGen method) (monai.apps.reconstruction.transforms.array.EquispacedKspaceMask method) (monai.apps.reconstruction.transforms.array.KspaceMask method) (monai.apps.reconstruction.transforms.array.RandomKspaceMask method) (monai.apps.reconstruction.transforms.dictionary.EquispacedKspaceMaskd method) (monai.apps.reconstruction.transforms.dictionary.ExtractDataKeyFromMetaKeyd method) (monai.apps.reconstruction.transforms.dictionary.RandomKspaceMaskd method) (monai.apps.reconstruction.transforms.dictionary.ReferenceBasedNormalizeIntensityd method) (monai.apps.reconstruction.transforms.dictionary.ReferenceBasedSpatialCropd method) (monai.data.PatchIter method) (monai.data.PatchIterd method) (monai.inferers.Inferer method) (monai.inferers.PatchInferer method) (monai.inferers.SaliencyInferer method) (monai.inferers.SimpleInferer method) (monai.inferers.SliceInferer method) (monai.inferers.SlidingWindowInferer method) (monai.inferers.SlidingWindowInfererAdapt method) (monai.inferers.SlidingWindowSplitter method) (monai.inferers.Splitter method) (monai.inferers.WSISlidingWindowSplitter method) (monai.transforms.Activations method) (monai.transforms.Activationsd method) (monai.transforms.AddCoordinateChannels method) (monai.transforms.AddCoordinateChannelsd method) (monai.transforms.AddExtremePointsChannel method) (monai.transforms.AddExtremePointsChanneld method) (monai.transforms.AdjustContrast method) (monai.transforms.AdjustContrastd method) (monai.transforms.Affine method) (monai.transforms.Affined method) (monai.transforms.AffineGrid method) (monai.transforms.ApplyPending method) (monai.transforms.ApplyPendingd method) (monai.transforms.AsChannelLast method) (monai.transforms.AsChannelLastd method) (monai.transforms.AsDiscrete method) (monai.transforms.AsDiscreted method) (monai.transforms.BoundingRect method) (monai.transforms.BoundingRectd method) (monai.transforms.CastToType method) (monai.transforms.CastToTyped method) (monai.transforms.CenterScaleCrop method) (monai.transforms.CenterSpatialCrop method) (monai.transforms.ClassesToIndices method) (monai.transforms.ClassesToIndicesd method) (monai.transforms.ClipIntensityPercentiles method) (monai.transforms.ClipIntensityPercentilesd method) (monai.transforms.Compose method) (monai.transforms.ComputeHoVerMaps method) (monai.transforms.ComputeHoVerMapsd method) (monai.transforms.ConcatItemsd method) (monai.transforms.ConvertToMultiChannelBasedOnBratsClasses method) (monai.transforms.ConvertToMultiChannelBasedOnBratsClassesd method) (monai.transforms.CopyItemsd method) (monai.transforms.Crop method) (monai.transforms.Cropd method) (monai.transforms.CropForeground method) (monai.transforms.CropForegroundd method) (monai.transforms.CuCIM method) (monai.transforms.CuCIMd method) (monai.transforms.CutMix method) (monai.transforms.CutMixd method) (monai.transforms.CutOut method) (monai.transforms.CutOutd method) (monai.transforms.DataStats method) (monai.transforms.DataStatsd method) (monai.transforms.DeleteItemsd method) (monai.transforms.DetectEnvelope method) (monai.transforms.DistanceTransformEDT method) (monai.transforms.DistanceTransformEDTd method) (monai.transforms.Ensembled method) (monai.transforms.EnsureChannelFirst method) (monai.transforms.EnsureChannelFirstd method) (monai.transforms.EnsureType method) (monai.transforms.EnsureTyped method) (monai.transforms.FgBgToIndices method) (monai.transforms.FgBgToIndicesd method) (monai.transforms.FillHoles method) (monai.transforms.FillHolesd method) (monai.transforms.FlattenSubKeysd method) (monai.transforms.Flip method) (monai.transforms.Flipd method) (monai.transforms.ForegroundMask method) (monai.transforms.ForegroundMaskd method) (monai.transforms.FromMetaTensord method) (monai.transforms.GaussianSharpen method) (monai.transforms.GaussianSharpend method) (monai.transforms.GaussianSmooth method) (monai.transforms.GaussianSmoothd method) (monai.transforms.GibbsNoise method) (monai.transforms.GibbsNoised method) (monai.transforms.GridDistortion method) (monai.transforms.GridDistortiond method) (monai.transforms.GridPatch method) (monai.transforms.GridPatchd method) (monai.transforms.GridSplit method) (monai.transforms.GridSplitd method) (monai.transforms.HistogramNormalize method) (monai.transforms.HistogramNormalized method) (monai.transforms.Identity method) (monai.transforms.Identityd method) (monai.transforms.ImageFilter method) (monai.transforms.ImageFilterd method) (monai.transforms.IntensityStats method) (monai.transforms.IntensityStatsd method) (monai.transforms.Invertd method) (monai.transforms.KeepLargestConnectedComponent method) (monai.transforms.KeepLargestConnectedComponentd method) (monai.transforms.KSpaceSpikeNoise method) (monai.transforms.KSpaceSpikeNoised method) (monai.transforms.LabelFilter method) (monai.transforms.LabelFilterd method) (monai.transforms.LabelToContour method) (monai.transforms.LabelToContourd method) (monai.transforms.LabelToMask method) (monai.transforms.LabelToMaskd method) (monai.transforms.Lambda method) (monai.transforms.Lambdad method) (monai.transforms.LoadImage method) (monai.transforms.LoadImaged method) (monai.transforms.MapLabelValue method) (monai.transforms.MapLabelValued method) (monai.transforms.MapTransform method) (monai.transforms.MaskIntensity method) (monai.transforms.MaskIntensityd method) (monai.transforms.MeanEnsemble method) (monai.transforms.MedianSmooth method) (monai.transforms.MedianSmoothd method) (monai.transforms.MixUp method) (monai.transforms.MixUpd method) (monai.transforms.NormalizeIntensity method) (monai.transforms.NormalizeIntensityd method) (monai.transforms.Orientation method) (monai.transforms.Orientationd method) (monai.transforms.Pad method) (monai.transforms.Padd method) (monai.transforms.PadListDataCollate method) (monai.transforms.ProbNMSd method) (monai.transforms.Rand2DElastic method) (monai.transforms.Rand2DElasticd method) (monai.transforms.Rand3DElastic method) (monai.transforms.Rand3DElasticd method) (monai.transforms.RandAdjustContrast method) (monai.transforms.RandAdjustContrastd method) (monai.transforms.RandAffine method) (monai.transforms.RandAffined method) (monai.transforms.RandAffineGrid method) (monai.transforms.RandAxisFlip method) (monai.transforms.RandAxisFlipd method) (monai.transforms.RandBiasField method) (monai.transforms.RandBiasFieldd method) (monai.transforms.RandCoarseDropoutd method) (monai.transforms.RandCoarseShuffled method) (monai.transforms.RandCoarseTransform method) (monai.transforms.RandCropByLabelClasses method) (monai.transforms.RandCropByLabelClassesd method) (monai.transforms.RandCropByPosNegLabel method) (monai.transforms.RandCropByPosNegLabeld method) (monai.transforms.RandCropd method) (monai.transforms.RandCuCIMd method) (monai.transforms.RandDeformGrid method) (monai.transforms.RandFlip method) (monai.transforms.RandFlipd method) (monai.transforms.RandGaussianNoise method) (monai.transforms.RandGaussianNoised method) (monai.transforms.RandGaussianSharpen method) (monai.transforms.RandGaussianSharpend method) (monai.transforms.RandGaussianSmooth method) (monai.transforms.RandGaussianSmoothd method) (monai.transforms.RandGibbsNoise method) (monai.transforms.RandGibbsNoised method) (monai.transforms.RandGridDistortion method) (monai.transforms.RandGridDistortiond method) (monai.transforms.RandGridPatch method) (monai.transforms.RandGridPatchd method) (monai.transforms.RandHistogramShift method) (monai.transforms.RandHistogramShiftd method) (monai.transforms.RandImageFilter method) (monai.transforms.RandImageFilterd method) (monai.transforms.RandKSpaceSpikeNoise method) (monai.transforms.RandKSpaceSpikeNoised method) (monai.transforms.RandLambda method) (monai.transforms.RandLambdad method) (monai.transforms.RandRicianNoise method) (monai.transforms.RandRicianNoised method) (monai.transforms.RandRotate method) (monai.transforms.RandRotate90 method) (monai.transforms.RandRotate90d method) (monai.transforms.RandRotated method) (monai.transforms.RandScaleCrop method) (monai.transforms.RandScaleIntensity method) (monai.transforms.RandScaleIntensityd method) (monai.transforms.RandScaleIntensityFixedMean method) (monai.transforms.RandScaleIntensityFixedMeand method) (monai.transforms.RandShiftIntensity method) (monai.transforms.RandShiftIntensityd method) (monai.transforms.RandSimulateLowResolution method) (monai.transforms.RandSimulateLowResolutiond method) (monai.transforms.RandSmoothDeform method) (monai.transforms.RandSmoothDeformd method) (monai.transforms.RandSmoothFieldAdjustContrast method) (monai.transforms.RandSmoothFieldAdjustContrastd method) (monai.transforms.RandSmoothFieldAdjustIntensity method) (monai.transforms.RandSmoothFieldAdjustIntensityd method) (monai.transforms.RandSpatialCrop method) (monai.transforms.RandSpatialCropSamples method) (monai.transforms.RandSpatialCropSamplesd method) (monai.transforms.RandStdShiftIntensity method) (monai.transforms.RandStdShiftIntensityd method) (monai.transforms.RandTorchVisiond method) (monai.transforms.RandWeightedCrop method) (monai.transforms.RandWeightedCropd method) (monai.transforms.RandZoom method) (monai.transforms.RandZoomd method) (monai.transforms.RemoveRepeatedChannel method) (monai.transforms.RemoveRepeatedChanneld method) (monai.transforms.RemoveSmallObjects method) (monai.transforms.RemoveSmallObjectsd method) (monai.transforms.RepeatChannel method) (monai.transforms.RepeatChanneld method) (monai.transforms.Resample method) (monai.transforms.ResampleToMatch method) (monai.transforms.ResampleToMatchd method) (monai.transforms.Resize method) (monai.transforms.Resized method) (monai.transforms.ResizeWithPadOrCrop method) (monai.transforms.Rotate method) (monai.transforms.Rotate90 method) (monai.transforms.Rotate90d method) (monai.transforms.Rotated method) (monai.transforms.SaveClassificationd method) (monai.transforms.SaveImage method) (monai.transforms.SaveImaged method) (monai.transforms.SavitzkyGolaySmooth method) (monai.transforms.SavitzkyGolaySmoothd method) (monai.transforms.ScaleIntensity method) (monai.transforms.ScaleIntensityd method) (monai.transforms.ScaleIntensityFixedMean method) (monai.transforms.ScaleIntensityRange method) (monai.transforms.ScaleIntensityRanged method) (monai.transforms.ScaleIntensityRangePercentiles method) (monai.transforms.ScaleIntensityRangePercentilesd method) (monai.transforms.SelectItemsd method) (monai.transforms.ShiftIntensity method) (monai.transforms.ShiftIntensityd method) (monai.transforms.SignalContinuousWavelet method) (monai.transforms.SignalFillEmpty method) (monai.transforms.SignalFillEmptyd method) (monai.transforms.SignalRandAddGaussianNoise method) (monai.transforms.SignalRandAddSine method) (monai.transforms.SignalRandAddSinePartial method) (monai.transforms.SignalRandAddSquarePulse method) (monai.transforms.SignalRandAddSquarePulsePartial method) (monai.transforms.SignalRandDrop method) (monai.transforms.SignalRandScale method) (monai.transforms.SignalRandShift method) (monai.transforms.SignalRemoveFrequency method) (monai.transforms.SimulateDelay method) (monai.transforms.SimulateDelayd method) (monai.transforms.SobelGradients method) (monai.transforms.SobelGradientsd method) (monai.transforms.Spacing method) (monai.transforms.Spacingd method) (monai.transforms.SpatialCrop method) (monai.transforms.SpatialResample method) (monai.transforms.SpatialResampled method) (monai.transforms.SplitDim method) (monai.transforms.SplitDimd method) (monai.transforms.SqueezeDim method) (monai.transforms.SqueezeDimd method) (monai.transforms.StdShiftIntensity method) (monai.transforms.StdShiftIntensityd method) (monai.transforms.ThresholdIntensity method) (monai.transforms.ThresholdIntensityd method) (monai.transforms.ToCupy method) (monai.transforms.ToCupyd method) (monai.transforms.ToDevice method) (monai.transforms.ToDeviced method) (monai.transforms.ToMetaTensord method) (monai.transforms.ToNumpy method) (monai.transforms.ToNumpyd method) (monai.transforms.ToPIL method) (monai.transforms.ToPILd method) (monai.transforms.TorchVision method) (monai.transforms.TorchVisiond method) (monai.transforms.ToTensor method) (monai.transforms.ToTensord method) (monai.transforms.Transform method) (monai.transforms.Transpose method) (monai.transforms.Transposed method) (monai.transforms.VoteEnsemble method) (monai.transforms.Zoom method) (monai.transforms.Zoomd method)

__contains__() (monai.bundle.ConfigParser method) __getattr__() (monai.bundle.ConfigParser method) __getitem__() (monai.bundle.ConfigParser method) (monai.data.Dataset method) __init__() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.detection.transforms.dictionary.ConvertBoxModed method) (monai.apps.detection.transforms.dictionary.ConvertBoxToStandardModed method) (monai.apps.detection.transforms.dictionary.StandardizeEmptyBoxd method) (monai.apps.detection.utils.ATSS_matcher.ATSSMatcher method) (monai.apps.reconstruction.transforms.array.KspaceMask method) (monai.bundle.ConfigParser method) (monai.data.ArrayDataset method) (monai.data.CacheDataset method) (monai.data.CacheNTransDataset method) (monai.data.Dataset method) (monai.data.folder_layout.FolderLayout method) (monai.data.GDSDataset method) (monai.data.ImageDataset method) (monai.data.ImageWriter method) (monai.data.IterableDataset method) (monai.data.ITKWriter method) (monai.data.LMDBDataset method) (monai.data.MetaTensor method) (monai.data.NibabelWriter method) (monai.data.PatchDataset method) (monai.data.PatchIter method) (monai.data.PersistentDataset method) (monai.data.PILWriter method) (monai.data.ZipDataset method) (monai.handlers.ClassificationSaver method) (monai.handlers.ClearMLHandler method) (monai.handlers.ClearMLImageHandler method) (monai.handlers.ClearMLStatsHandler method) (monai.handlers.ConfusionMatrix method) (monai.handlers.HausdorffDistance method) (monai.handlers.LrScheduleHandler method) (monai.handlers.MeanAbsoluteError method) (monai.handlers.MeanDice method) (monai.handlers.MeanIoUHandler method) (monai.handlers.MeanSquaredError method) (monai.handlers.MetricsReloadedBinaryHandler method) (monai.handlers.MetricsReloadedCategoricalHandler method) (monai.handlers.PanopticQuality method) (monai.handlers.PeakSignalToNoiseRatio method) (monai.handlers.PostProcessing method) (monai.handlers.probability_maps.ProbMapProducer method) (monai.handlers.RootMeanSquaredError method) (monai.handlers.SmartCacheHandler method) (monai.handlers.StatsHandler method) (monai.handlers.SurfaceDistance method) (monai.handlers.TensorBoardImageHandler method) (monai.handlers.TensorBoardStatsHandler method) (monai.handlers.ValidationHandler method) (monai.losses.BarlowTwinsLoss method) (monai.losses.BendingEnergyLoss method) (monai.losses.ContrastiveLoss method) (monai.losses.DeepSupervisionLoss method) (monai.losses.DiceCELoss method) (monai.losses.DiceFocalLoss method) (monai.losses.DiceLoss method) (monai.losses.DiffusionLoss method) (monai.losses.FocalLoss method) (monai.losses.GeneralizedDiceLoss method) (monai.losses.GeneralizedWassersteinDiceLoss method) (monai.losses.GlobalMutualInformationLoss method) (monai.losses.HausdorffDTLoss method) (monai.losses.LocalNormalizedCrossCorrelationLoss method) (monai.losses.MaskedDiceLoss method) (monai.losses.MaskedLoss method) (monai.losses.MultiScaleLoss method) (monai.losses.SoftclDiceLoss method) (monai.losses.SoftDiceclDiceLoss method) (monai.losses.ssim_loss.SSIMLoss method) (monai.losses.SURELoss method) (monai.losses.TverskyLoss method) (monai.metrics.Cumulative method) (monai.metrics.DiceHelper method) (monai.networks.blocks.ActiConvNormBlock method) (monai.networks.blocks.ChannelSELayer method) (monai.networks.blocks.CRF method) (monai.networks.blocks.FactorizedIncreaseBlock method) (monai.networks.blocks.FactorizedReduceBlock method) (monai.networks.blocks.GCN method) (monai.networks.blocks.LocalNetDownSampleBlock method) (monai.networks.blocks.LocalNetFeatureExtractorBlock method) (monai.networks.blocks.LocalNetUpSampleBlock method) (monai.networks.blocks.MaxAvgPool method) (monai.networks.blocks.MLPBlock method) (monai.networks.blocks.P3DActiConvNormBlock method) (monai.networks.blocks.PatchEmbeddingBlock method) (monai.networks.blocks.Refine method) (monai.networks.blocks.RegistrationDownSampleBlock method) (monai.networks.blocks.RegistrationExtractionBlock method) (monai.networks.blocks.RegistrationResidualConvBlock method) (monai.networks.blocks.ResBlock method) (monai.networks.blocks.ResidualSELayer method) (monai.networks.blocks.SABlock method) (monai.networks.blocks.SEBlock method) (monai.networks.blocks.SimpleASPP method) (monai.networks.blocks.SubpixelUpsample method) (monai.networks.blocks.TransformerBlock method) (monai.networks.blocks.UnetrBasicBlock method) (monai.networks.blocks.UnetrPrUpBlock method) (monai.networks.blocks.UnetrUpBlock method) (monai.networks.blocks.UpSample method) (monai.networks.blocks.Warp method) (monai.networks.layers.AffineTransform method) (monai.networks.layers.ChannelPad method) (monai.networks.layers.ConjugateGradient method) (monai.networks.layers.GaussianFilter method) (monai.networks.layers.Reshape method) (monai.networks.layers.SkipConnection method) (monai.networks.nets.BasicUNet method) (monai.networks.nets.BasicUNetPlusPlus method) (monai.networks.nets.EfficientNet method) (monai.networks.nets.EfficientNetBN method) (monai.networks.nets.EfficientNetBNFeatures method) (monai.networks.nets.FlexibleUNet method) (monai.networks.nets.FullyConnectedNet method) (monai.networks.nets.GlobalNet method) (monai.networks.nets.HighResBlock method) (monai.networks.nets.LocalNet method) (monai.networks.nets.RegUNet method) (monai.networks.nets.ResNetFeatures method) (monai.networks.nets.SwinUNETR method) (monai.networks.nets.TopologyInstance method) (monai.networks.nets.TopologySearch method) (monai.networks.nets.Transchex method) (monai.networks.nets.UNETR method) (monai.networks.nets.ViT method) (monai.networks.nets.ViTAutoEnc method) (monai.optimizers.LearningRateFinder method) (monai.optimizers.WarmupCosineSchedule method) (monai.transforms.Activationsd method) (monai.transforms.Affine method) (monai.transforms.Affined method) (monai.transforms.AsChannelLastd method) (monai.transforms.AsDiscreted method) (monai.transforms.BatchInverseTransform method) (monai.transforms.BorderPadd method) (monai.transforms.CastToType method) (monai.transforms.CastToTyped method) (monai.transforms.ClassesToIndices method) (monai.transforms.ClipIntensityPercentiles method) (monai.transforms.ConcatItemsd method) (monai.transforms.CopyItemsd method) (monai.transforms.CropForeground method) (monai.transforms.CropForegroundd method) (monai.transforms.DataStats method) (monai.transforms.DataStatsd method) (monai.transforms.DeleteItemsd method) (monai.transforms.DivisiblePad method) (monai.transforms.DivisiblePadd method) (monai.transforms.Ensembled method) (monai.transforms.EnsureChannelFirstd method) (monai.transforms.EnsureTyped method) (monai.transforms.FillHoles method) (monai.transforms.FillHolesd method) (monai.transforms.FromMetaTensord method) (monai.transforms.GridDistortion method) (monai.transforms.GridDistortiond method) (monai.transforms.Identityd method) (monai.transforms.Invertd method) (monai.transforms.KeepLargestConnectedComponent method) (monai.transforms.KeepLargestConnectedComponentd method) (monai.transforms.LabelFilter method) (monai.transforms.LabelFilterd method) (monai.transforms.LabelToContourd method) (monai.transforms.LoadImage method) (monai.transforms.LoadImaged method) (monai.transforms.MapLabelValue method) (monai.transforms.MapLabelValued method) (monai.transforms.MeanEnsembled method) (monai.transforms.Orientation method) (monai.transforms.Orientationd method) (monai.transforms.Padd method) (monai.transforms.Rand2DElastic method) (monai.transforms.Rand2DElasticd method) (monai.transforms.Rand3DElastic method) (monai.transforms.Rand3DElasticd method) (monai.transforms.RandAffine method) (monai.transforms.RandAffined method) (monai.transforms.RandAffineGrid method) (monai.transforms.RandBiasFieldd method) (monai.transforms.RandDeformGrid method) (monai.transforms.RandGridDistortion method) (monai.transforms.RandGridDistortiond method) (monai.transforms.RandRotate90 method) (monai.transforms.RandRotate90d method) (monai.transforms.RandScaleIntensity method) (monai.transforms.RandScaleIntensityd method) (monai.transforms.RandScaleIntensityFixedMean method) (monai.transforms.RandScaleIntensityFixedMeand method) (monai.transforms.RandShiftIntensity method) (monai.transforms.RandShiftIntensityd method) (monai.transforms.RandSimulateLowResolution method) (monai.transforms.RandSimulateLowResolutiond method) (monai.transforms.RandStdShiftIntensity method) (monai.transforms.RandStdShiftIntensityd method) (monai.transforms.RemoveRepeatedChanneld method) (monai.transforms.RepeatChanneld method) (monai.transforms.Resample method) (monai.transforms.ResampleToMatchd method) (monai.transforms.Rotate90 method) (monai.transforms.Rotate90d method) (monai.transforms.SaveClassificationd method) (monai.transforms.ScaleIntensity method) (monai.transforms.ScaleIntensityd method) (monai.transforms.ScaleIntensityFixedMean method) (monai.transforms.ShiftIntensityd method) (monai.transforms.SignalContinuousWavelet method) (monai.transforms.SignalFillEmpty method) (monai.transforms.SignalRandAddGaussianNoise method) (monai.transforms.SignalRandAddSine method) (monai.transforms.SignalRandAddSinePartial method) (monai.transforms.SignalRandAddSquarePulse method) (monai.transforms.SignalRandAddSquarePulsePartial method) (monai.transforms.SignalRandDrop method) (monai.transforms.SignalRandScale method) (monai.transforms.SignalRandShift method) (monai.transforms.SignalRemoveFrequency method) (monai.transforms.SimulateDelay method) (monai.transforms.SimulateDelayd method) (monai.transforms.Spacing method) (monai.transforms.Spacingd method) (monai.transforms.SpatialCrop method) (monai.transforms.SpatialCropd method) (monai.transforms.SpatialPadd method) (monai.transforms.SpatialResample method) (monai.transforms.SpatialResampled method) (monai.transforms.SplitDimd method) (monai.transforms.SqueezeDim method) (monai.transforms.SqueezeDimd method) (monai.transforms.StdShiftIntensityd method) (monai.transforms.ToDevice method) (monai.transforms.ToDeviced method) (monai.transforms.ToNumpyd method) (monai.transforms.ToPILd method) (monai.transforms.TorchVision method) (monai.transforms.TorchVisiond method) (monai.transforms.ToTensord method) (monai.transforms.VoteEnsembled method) (monai.utils.state_cacher.StateCacher method) (monai.visualize.class_activation_maps.CAM method) (monai.visualize.class_activation_maps.ModelWithHooks method) (monai.visualize.occlusion_sensitivity.OcclusionSensitivity method) __repr__() (monai.bundle.ConfigParser method) __setitem__() (monai.bundle.ConfigParser method) __weakref__ (monai.bundle.ConfigParser attribute)

A

abort() (monai.fl.client.BaseClient method) (monai.fl.client.MonaiAlgo method) ActiConvNormBlock (class in monai.networks.blocks) Activations (class in monai.transforms) Activationsd (class in monai.transforms) adaptor() (in module monai.transforms.adaptors) add() (monai.utils.component_store.ComponentStore method) add_analyzer() (monai.auto3dseg.SegSummarizer method) add_animated_gif() (in module monai.visualize.img2tensorboard) add_def() (monai.utils.component_store.ComponentStore method) add_factory_callable() (monai.networks.layers.LayerFactory method) add_factory_class() (monai.networks.layers.LayerFactory method) add_inferer() (monai.apps.auto3dseg.AlgoEnsembleBuilder method) add_item() (monai.bundle.ReferenceResolver method) add_result() (monai.utils.profiling.WorkflowProfiler method) AddCoordinateChannels (class in monai.transforms) AddCoordinateChannelsd (class in monai.transforms) AddExtremePointsChannel (class in monai.transforms) AddExtremePointsChanneld (class in monai.transforms) AddGuidanceFromPointsd (class in monai.apps.deepgrow.transforms) AddGuidanceSignald (class in monai.apps.deepgrow.transforms) AddInitialSeedPointd (class in monai.apps.deepgrow.transforms) AddRandomGuidanced (class in monai.apps.deepgrow.transforms) AdjustContrast (class in monai.transforms) AdjustContrastd (class in monai.transforms) ADN (class in monai.networks.blocks) Affine (class in monai.transforms) affine (monai.data.MetaTensor property) affine_func() (in module monai.transforms.spatial.functional) affine_to_spacing() (in module monai.data.utils) AffineBox (class in monai.apps.detection.transforms.array) AffineBoxToImageCoordinated (class in monai.apps.detection.transforms.dictionary) AffineBoxToImageCoordinateD (in module monai.apps.detection.transforms.dictionary) AffineBoxToImageCoordinateDict (in module monai.apps.detection.transforms.dictionary) Affined (class in monai.transforms) AffineGrid (class in monai.transforms) AffineTransform (class in monai.networks.layers) aggregate() (monai.inferers.AvgMerger method) (monai.inferers.Merger method) (monai.inferers.ZarrAvgMerger method) (monai.metrics.ConfusionMatrixMetric method) (monai.metrics.Cumulative method) (monai.metrics.CumulativeAverage method) (monai.metrics.DiceMetric method) (monai.metrics.GeneralizedDiceScore method) (monai.metrics.HausdorffDistanceMetric method) (monai.metrics.LossMetric method) (monai.metrics.MeanIoU method) (monai.metrics.PanopticQualityMetric method) (monai.metrics.ROCAUCMetric method) (monai.metrics.SurfaceDiceMetric method) (monai.metrics.SurfaceDistanceMetric method) AHNet (class in monai.networks.nets) Algo (class in monai.auto3dseg) algo_from_pickle() (in module monai.auto3dseg) algo_to_pickle() (in module monai.auto3dseg) AlgoEnsemble (class in monai.apps.auto3dseg) AlgoEnsembleBestByFold (class in monai.apps.auto3dseg) AlgoEnsembleBestN (class in monai.apps.auto3dseg) AlgoEnsembleBuilder (class in monai.apps.auto3dseg)

AlgoEnsembleKeys (class in monai.utils.enums) AlgoGen (class in monai.auto3dseg) AlgoKeys (class in monai.utils.enums) alias() (in module monai.utils.aliases) allclose() (in module monai.transforms.utils_pytorch_numpy_unification) allow_missing_keys_mode() (in module monai.transforms.utils) Analyzer (class in monai.auto3dseg) AnchorGenerator (class in monai.apps.detection.utils.anchor_utils) AnchorGeneratorWithAnchorShape (class in monai.apps.detection.utils.anchor_utils) any_np_pt() (in module monai.transforms.utils_pytorch_numpy_unification) append() (monai.metrics.Cumulative method) (monai.metrics.CumulativeAverage method) applied_operations (monai.data.meta_obj.MetaObj property) apply_affine_to_boxes() (in module monai.apps.detection.transforms.box_ops) apply_alias() (in module monai.transforms.adaptors) apply_filter() (in module monai.networks.layers) ApplyPending (class in monai.transforms) ApplyPendingd (class in monai.transforms) argsort() (in module monai.transforms.utils_pytorch_numpy_unification) argwhere() (in module monai.transforms.utils_pytorch_numpy_unification) array (monai.data.MetaTensor property) ArrayDataset (class in monai.data) as_dict() (monai.data.MetaTensor method) as_tensor() (monai.data.MetaTensor method) AsChannelLast (class in monai.transforms) AsChannelLastd (class in monai.transforms) ascontiguousarray() (in module monai.transforms.utils_pytorch_numpy_unification) AsDiscrete (class in monai.transforms) AsDiscreted (class in monai.transforms) astype() (monai.data.MetaTensor method) ATSSMatcher (class in monai.apps.detection.utils.ATSS_matcher) attach() (monai.handlers.CheckpointLoader method) (monai.handlers.CheckpointSaver method) (monai.handlers.ClassificationSaver method) (monai.handlers.DecollateBatch method) (monai.handlers.EarlyStopHandler method) (monai.handlers.IgniteMetricHandler method) (monai.handlers.LrScheduleHandler method) (monai.handlers.MetricLogger method) (monai.handlers.MetricsSaver method) (monai.handlers.MLFlowHandler method) (monai.handlers.nvtx_handlers.MarkHandler method) (monai.handlers.nvtx_handlers.RangeHandler method) (monai.handlers.nvtx_handlers.RangePopHandler method) (monai.handlers.nvtx_handlers.RangePushHandler method) (monai.handlers.ParamSchedulerHandler method) (monai.handlers.PostProcessing method) (monai.handlers.probability_maps.ProbMapProducer method) (monai.handlers.SmartCacheHandler method) (monai.handlers.StatsHandler method) (monai.handlers.TensorBoardImageHandler method) (monai.handlers.TensorBoardStatsHandler method) (monai.handlers.ValidationHandler method) attach_evaluator() (monai.handlers.MetricLogger method) attach_hook() (in module monai.transforms.utils) AttentionUnet (class in monai.networks.nets) AutoEncoder (class in monai.networks.nets) AutoRunner (class in monai.apps.auto3dseg) Average (class in monai.utils.enums) AvgMerger (class in monai.inferers)

B

BackboneWithFPN (class in monai.networks.blocks) backward() (monai.networks.layers.BilateralFilter static method) BarlowTwinsLoss (class in monai.losses) BaseClient (class in monai.fl.client) BaseWSIReader (class in monai.data) BasicUNet (class in monai.networks.nets) BasicUnet (in module monai.networks.nets) Basicunet (in module monai.networks.nets) BasicUNetPlusPlus (class in monai.networks.nets) BasicUnetPlusPlus (in module monai.networks.nets) BasicunetPlusPlus (in module monai.networks.nets) batched_nms() (in module monai.data.box_utils) BatchInverseTransform (class in monai.transforms) bce() (monai.losses.DiceCELoss method) BendingEnergyLoss (class in monai.losses) BilateralFilter (class in monai.networks.layers) blend_images() (in module monai.visualize.utils) BlendMode (class in monai.utils.enums) BlockArgs (class in monai.networks.nets) BorderPad (class in monai.transforms) BorderPadd (class in monai.transforms) BoundingRect (class in monai.transforms) BoundingRectd (class in monai.transforms)

box_area() (in module monai.data.box_utils) box_centers() (in module monai.data.box_utils) box_giou() (in module monai.data.box_utils) box_iou() (in module monai.data.box_utils) box_pair_giou() (in module monai.data.box_utils) BoxCoder (class in monai.apps.detection.utils.box_coder) boxes_center_distance() (in module monai.data.box_utils) boxes_to_corners() (monai.data.box_utils.BoxMode method) (monai.data.box_utils.CenterSizeMode method) (monai.data.box_utils.CornerCornerModeTypeA method) (monai.data.box_utils.CornerCornerModeTypeB method) (monai.data.box_utils.CornerCornerModeTypeC method) (monai.data.box_utils.CornerSizeMode method) BoxMode (class in monai.data.box_utils) BoxModeName (class in monai.utils.enums) BoxSelector (class in monai.apps.detection.utils.box_selector) BoxToMask (class in monai.apps.detection.transforms.array) BoxToMaskd (class in monai.apps.detection.transforms.dictionary) BoxToMaskD (in module monai.apps.detection.transforms.dictionary) BoxToMaskDict (in module monai.apps.detection.transforms.dictionary) BundleAlgo (class in monai.apps.auto3dseg) BundleGen (class in monai.apps.auto3dseg) BundleProperty (class in monai.utils.enums) BundlePropertyConfig (class in monai.utils.enums)

C

CacheDataset (class in monai.data) CacheNTransDataset (class in monai.data) calculate_out_shape() (in module monai.networks.layers.convutils) call_update() (monai.transforms.MapTransform method) CAM (class in monai.visualize.class_activation_maps) CameraDataset (class in monai.data.video_dataset) CastToType (class in monai.transforms) CastToTyped (class in monai.transforms) ce() (monai.losses.DiceCELoss method) centers_in_boxes() (in module monai.data.box_utils) CenterScaleCrop (class in monai.transforms) CenterScaleCropd (class in monai.transforms) CenterSizeMode (class in monai.data.box_utils) CenterSpatialCrop (class in monai.transforms) CenterSpatialCropd (class in monai.transforms) ChannelMatching (class in monai.utils.enums) ChannelPad (class in monai.networks.layers) ChannelSELayer (class in monai.networks.blocks) check_boundaries() (in module monai.transforms.utils) check_dict_values_same_length() (in module monai.apps.detection.utils.predict_utils) check_hash() (in module monai.apps) check_input_images() (in module monai.apps.detection.utils.detector_utils) check_key_duplicates() (in module monai.utils.misc) check_kwargs_exist_in_class_init() (in module monai.utils.misc) check_missing_files() (in module monai.data) check_non_lazy_pending_ops() (in module monai.transforms.utils) check_parent_dir() (in module monai.utils.misc) check_training_targets() (in module monai.apps.detection.utils.detector_utils) check_transforms_match() (monai.transforms.TraceableTransform method) CheckpointLoader (class in monai.handlers) CheckpointSaver (class in monai.handlers) ckpt_export() (in module monai.bundle) ClassesToIndices (class in monai.transforms) ClassesToIndicesd (class in monai.transforms) ClassificationSaver (class in monai.handlers) Classifier (class in monai.networks.nets) ClearMLHandler (class in monai.handlers) ClearMLImageHandler (class in monai.handlers) ClearMLStatsHandler (class in monai.handlers) ClientAlgo (class in monai.fl.client) ClientAlgoStats (class in monai.fl.client) clip() (in module monai.transforms.utils_pytorch_numpy_unification) clip_boxes_to_image() (in module monai.data.box_utils) ClipBoxToImage (class in monai.apps.detection.transforms.array) ClipBoxToImaged (class in monai.apps.detection.transforms.dictionary) ClipBoxToImageD (in module monai.apps.detection.transforms.dictionary) ClipBoxToImageDict (in module monai.apps.detection.transforms.dictionary) ClipIntensityPercentiles (class in monai.transforms) ClipIntensityPercentilesd (class in monai.transforms) clone() (monai.data.MetaTensor method) close() (monai.data.CSVIterableDataset method) (monai.handlers.MLFlowHandler method) (monai.handlers.TensorBoardHandler method) CoilSensitivityModel (class in monai.apps.reconstruction.networks.nets.coil_sensitivity_model) collect_algos() (monai.apps.auto3dseg.AlgoEnsembleBestByFold method) (monai.apps.auto3dseg.AlgoEnsembleBestN method) ColorOrder (class in monai.utils.enums) CommonKeys (class in monai.utils.enums) CompInitMode (class in monai.utils.enums) complete() (monai.handlers.MLFlowHandler method) completed() (monai.handlers.CheckpointSaver method) (monai.handlers.SmartCacheHandler method) complex_abs() (in module monai.apps.reconstruction.complex_utils) complex_conj() (in module monai.apps.reconstruction.complex_utils) complex_mul() (in module monai.apps.reconstruction.complex_utils) complex_normalize() (in module monai.apps.reconstruction.networks.nets.utils) ComplexUnet (class in monai.apps.reconstruction.networks.nets.complex_unet) ComponentLocator (class in monai.bundle) ComponentStore (class in monai.utils.component_store) Compose (class in monai.transforms) compute() (monai.handlers.IgniteMetricHandler method) compute_anchor_matched_idxs() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) compute_average_surface_distance() (in module monai.metrics) compute_bounding_box() (monai.transforms.CropForeground method) compute_box_loss() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) compute_cls_loss() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) compute_confusion_matrix_metric() (in module monai.metrics) compute_divisible_spatial_size() (in module monai.transforms.utils) compute_fp_tp() (monai.apps.pathology.metrics.LesionFROC method) compute_fp_tp_probs() (in module monai.metrics) compute_frechet_distance() (in module monai.metrics) compute_froc_curve_data() (in module monai.metrics) compute_froc_score() (in module monai.metrics) compute_generalized_dice() (in module monai.metrics) compute_hausdorff_distance() (in module monai.metrics) compute_importance_map() (in module monai.data.utils) compute_iou() (in module monai.metrics) compute_isolated_tumor_cells() (in module monai.apps.pathology.utils) compute_loss() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) compute_map() (monai.visualize.class_activation_maps.CAM method) (monai.visualize.class_activation_maps.GradCAM method) (monai.visualize.class_activation_maps.GradCAMpp method) compute_matches() (monai.apps.detection.utils.ATSS_matcher.ATSSMatcher method) (monai.apps.detection.utils.ATSS_matcher.Matcher method) compute_mmd() (in module monai.metrics) compute_multi_instance_mask() (in module monai.apps.pathology.utils) compute_pad_width() (monai.transforms.BorderPad method) (monai.transforms.DivisiblePad method) (monai.transforms.Pad method) (monai.transforms.SpatialPad method) compute_panoptic_quality() (in module monai.metrics) compute_percent_hausdorff_distance() (in module monai.metrics) compute_roc_auc() (in module monai.metrics) compute_shape_offset() (in module monai.data.utils) compute_slices() (monai.transforms.CenterSpatialCrop method) (monai.transforms.Crop static method)

compute_surface_dice() (in module monai.metrics) compute_variance() (in module monai.metrics) ComputeHoVerMaps (class in monai.transforms) ComputeHoVerMapsd (class in monai.transforms) concat_multikeys_to_dict() (in module monai.auto3dseg) concat_val_to_np() (in module monai.auto3dseg) concatenate() (in module monai.transforms.utils_pytorch_numpy_unification) ConcatItemsd (class in monai.transforms) ConfigComponent (class in monai.bundle) ConfigExpression (class in monai.bundle) ConfigItem (class in monai.bundle) ConfigParser (class in monai.bundle) ConfusionMatrix (class in monai.handlers) ConfusionMatrixMetric (class in monai.metrics) ConjugateGradient (class in monai.networks.layers) constant_occlusion() (monai.visualize.occlusion_sensitivity.OcclusionSensitivity static method) ContrastiveLoss (class in monai.losses) convert_applied_interp_mode() (in module monai.transforms.utils) convert_box_mode() (in module monai.data.box_utils) convert_box_to_mask() (in module monai.apps.detection.transforms.box_ops) convert_box_to_standard_mode() (in module monai.data.box_utils) convert_data_type() (in module monai.utils.type_conversion) convert_dataset() (monai.apps.nnunet.nnUNetV2Runner method) convert_mask_to_box() (in module monai.apps.detection.transforms.box_ops) convert_msd_dataset() (monai.apps.nnunet.nnUNetV2Runner method) convert_pad_mode() (in module monai.transforms.utils) convert_tables_to_dicts() (in module monai.data.utils) convert_to_channel_last() (monai.data.ImageWriter class method) convert_to_contiguous() (in module monai.transforms.utils) convert_to_cupy() (in module monai.utils.type_conversion) convert_to_dst_type() (in module monai.utils.type_conversion) convert_to_numpy() (in module monai.utils.type_conversion) convert_to_onnx() (in module monai.networks.utils) convert_to_tensor() (in module monai.utils.type_conversion) convert_to_tensor_complex() (in module monai.apps.reconstruction.complex_utils) convert_to_torchscript() (in module monai.networks.utils) convert_to_trt() (in module monai.networks.utils) ConvertBoxMode (class in monai.apps.detection.transforms.array) ConvertBoxModed (class in monai.apps.detection.transforms.dictionary) ConvertBoxModeD (in module monai.apps.detection.transforms.dictionary) ConvertBoxModeDict (in module monai.apps.detection.transforms.dictionary) ConvertBoxToStandardMode (class in monai.apps.detection.transforms.array) ConvertBoxToStandardModed (class in monai.apps.detection.transforms.dictionary) ConvertBoxToStandardModeD (in module monai.apps.detection.transforms.dictionary) ConvertBoxToStandardModeDict (in module monai.apps.detection.transforms.dictionary) ConvertToMultiChannelBasedOnBratsClasses (class in monai.transforms) ConvertToMultiChannelBasedOnBratsClassesd (class in monai.transforms) ConvertUnits (class in monai.utils.misc) Convolution (class in monai.networks.blocks) copy_items() (monai.data.meta_obj.MetaObj static method) copy_meta_from() (monai.data.meta_obj.MetaObj method) copy_model_state() (in module monai.networks.utils) copy_to_device() (in module monai.utils.misc) CopyItemsd (class in monai.transforms) copypaste_arrays() (in module monai.transforms.utils) CornerCornerModeTypeA (class in monai.data.box_utils) CornerCornerModeTypeB (class in monai.data.box_utils) CornerCornerModeTypeC (class in monai.data.box_utils) corners_to_boxes() (monai.data.box_utils.BoxMode method) (monai.data.box_utils.CenterSizeMode method) (monai.data.box_utils.CornerCornerModeTypeA method) (monai.data.box_utils.CornerCornerModeTypeB method) (monai.data.box_utils.CornerCornerModeTypeC method) (monai.data.box_utils.CornerSizeMode method) CornerSizeMode (class in monai.data.box_utils) correct_nifti_header_if_necessary() (in module monai.data.utils) create_backend_obj() (monai.data.ImageWriter class method) (monai.data.ITKWriter class method) (monai.data.NibabelWriter class method) (monai.data.PILWriter class method) create_control_grid() (in module monai.transforms.utils) create_cross_validation_datalist() (in module monai.data) create_dataset() (in module monai.apps.deepgrow.dataset) create_file_basename() (in module monai.data.utils) create_grid() (in module monai.transforms.utils) create_paired_events() (monai.handlers.nvtx_handlers.RangeHandler method) create_rotate() (in module monai.transforms.utils) create_scale() (in module monai.transforms.utils) create_shear() (in module monai.transforms.utils) create_test_image_2d() (in module monai.data.synthetic) create_test_image_3d() (in module monai.data.synthetic) create_translate() (in module monai.transforms.utils) CRF (class in monai.networks.blocks) Critic (class in monai.networks.nets) Crop (class in monai.transforms) crop_func() (in module monai.transforms.croppad.functional) crop_meshgrid() (monai.visualize.occlusion_sensitivity.OcclusionSensitivity static method) crop_or_pad_nd() (in module monai.transforms.croppad.functional) crop_pad() (monai.transforms.CropForeground method) Cropd (class in monai.transforms) CropForeground (class in monai.transforms) CropForegroundd (class in monai.transforms) CrossValidation (class in monai.apps) CSVDataset (class in monai.data) CSVIterableDataset (class in monai.data) CuCIM (class in monai.transforms) CuCIMd (class in monai.transforms) CuCIMWSIReader (class in monai.data) cumsum() (in module monai.transforms.utils_pytorch_numpy_unification) Cumulative (class in monai.metrics) CumulativeAverage (class in monai.metrics) CumulativeIterationMetric (class in monai.metrics) CutMix (class in monai.transforms) CutMixd (class in monai.transforms) CutOut (class in monai.transforms) CutOutd (class in monai.transforms)

D

DAF3D (class in monai.networks.nets) damerau_levenshtein_distance() (in module monai.utils.module) DataAnalyzer (class in monai.apps.auto3dseg) datafold_read() (in module monai.auto3dseg) DataLoader (class in monai.data) Dataset (class in monai.data) DatasetFunc (class in monai.data) DatasetSummary (class in monai.data) DataStats (class in monai.transforms) DataStatsd (class in monai.transforms) DataStatsKeys (class in monai.utils.enums) DecathlonDataset (class in monai.apps) decode() (monai.apps.detection.utils.box_coder.BoxCoder method) (monai.networks.nets.TopologySearch method) decode_single() (monai.apps.detection.utils.box_coder.BoxCoder method) decollate_batch() (in module monai.data.utils) DecollateBatch (class in monai.handlers) Decollated (class in monai.transforms) DeepSupervisionLoss (class in monai.losses) default_metric_cmp_fn() (in module monai.engines.utils) default_name_formatter() (in module monai.data.folder_layout) default_normalizer() (in module monai.visualize.class_activation_maps) default_prepare_batch() (in module monai.engines.utils) DeleteItemsd (class in monai.transforms) dense_patch_slices() (in module monai.data.utils) DenseBlock (class in monai.networks.blocks) DenseNet (class in monai.networks.nets) DenseNet121 (class in monai.networks.nets) DenseNet169 (class in monai.networks.nets) DenseNet201 (class in monai.networks.nets) DenseNet264 (class in monai.networks.nets) deprecated() (in module monai.utils.deprecate_utils) deprecated_arg() (in module monai.utils.deprecate_utils) deprecated_arg_default() (in module monai.utils.deprecate_utils)

DeprecatedError DetectEnvelope (class in monai.transforms) Dice (in module monai.losses) dice (in module monai.losses) DiceCELoss (class in monai.losses) DiceCEReduction (class in monai.utils.enums) DiceFocalLoss (class in monai.losses) DiceHelper (class in monai.metrics) DiceLoss (class in monai.losses) DiceMetric (class in monai.metrics) DiffusionLoss (class in monai.losses) DiNTS (class in monai.networks.nets) Discriminator (class in monai.networks.nets) distance_field() (monai.losses.HausdorffDTLoss method) distance_transform_edt() (in module monai.transforms.utils) DistanceTransformEDT (class in monai.transforms) DistanceTransformEDTd (class in monai.transforms) DistributedSampler (class in monai.data) DistributedWeightedRandomSampler (class in monai.data) divisible_pad_t() (in module monai.apps.reconstruction.networks.nets.utils) DivisiblePad (class in monai.transforms) DivisiblePadd (class in monai.transforms) do_metric_reduction() (in module monai.metrics.utils) download() (in module monai.bundle) download_and_extract() (in module monai.apps) download_mmar() (in module monai.apps) download_url() (in module monai.apps) dtype_numpy_to_torch() (in module monai.utils.type_conversion) dtype_torch_to_numpy() (in module monai.utils.type_conversion) dump_csv() (monai.utils.profiling.WorkflowProfiler method) DVF2DDF (class in monai.networks.blocks) DynUNet (class in monai.networks.nets) DynUnet (in module monai.networks.nets) Dynunet (in module monai.networks.nets)

E

EarlyStopHandler (class in monai.handlers) EfficientNet (class in monai.networks.nets) EfficientNetBN (class in monai.networks.nets) EfficientNetBNFeatures (class in monai.networks.nets) encode() (monai.apps.detection.utils.box_coder.BoxCoder method) encode_boxes() (in module monai.apps.detection.utils.box_coder) encode_single() (monai.apps.detection.utils.box_coder.BoxCoder method) engine_apply_transform() (in module monai.engines.utils) EngineStatsKeys (class in monai.utils.enums) ensemble_pred() (monai.apps.auto3dseg.AlgoEnsemble method) Ensembled (class in monai.transforms) EnsembleEvaluator (class in monai.engines) EnsembleRunner (class in monai.apps.auto3dseg) ensure_dict_value_to_list_() (in module monai.apps.detection.utils.predict_utils) ensure_torch_and_prune_meta() (monai.data.MetaTensor static method) ensure_tuple() (in module monai.utils.misc) ensure_tuple_rep() (in module monai.utils.misc) ensure_tuple_size() (in module monai.utils.misc) EnsureChannelFirst (class in monai.transforms) EnsureChannelFirstd (class in monai.transforms) EnsureType (class in monai.transforms) EnsureTyped (class in monai.transforms) epoch_completed() (monai.handlers.MLFlowHandler method) (monai.handlers.SmartCacheHandler method) (monai.handlers.StatsHandler method) (monai.handlers.TensorBoardStatsHandler method) equalize_hist() (in module monai.transforms.utils) EquispacedKspaceMask (class in monai.apps.reconstruction.transforms.array)

EquispacedKspaceMaskd (class in monai.apps.reconstruction.transforms.dictionary) eval_mode() (in module monai.networks.utils) evaluate() (monai.apps.pathology.metrics.LesionFROC method) (monai.auto3dseg.Operations method) (monai.auto3dseg.SampleOperations method) (monai.auto3dseg.SummaryOperations method) (monai.bundle.ConfigExpression method) (monai.fl.client.ClientAlgo method) (monai.fl.client.MonaiAlgo method) Evaluator (class in monai.engines) evenly_divisible_all_gather() (in module monai.utils.dist) exact_version() (in module monai.utils.module) exception_raised() (monai.handlers.CheckpointSaver method) (monai.handlers.StatsHandler method) expand_ratio (monai.networks.nets.BlockArgs attribute) ExponentialLR (class in monai.optimizers) export() (in module monai.utils.module) export_bundle_algo_history() (in module monai.apps.auto3dseg) export_cache() (monai.apps.auto3dseg.AutoRunner method) export_config_file() (monai.bundle.ConfigParser class method) export_to_disk() (monai.apps.auto3dseg.BundleAlgo method) extend() (monai.metrics.Cumulative method) extract_fingerprints() (monai.apps.nnunet.nnUNetV2Runner method) extractall() (in module monai.apps) ExtractDataKeyFromMetaKeyd (class in monai.apps.reconstruction.transforms.dictionary) ExtractHEStains (class in monai.apps.pathology.transforms.stain.array) ExtractHEStainsd (class in monai.apps.pathology.transforms.stain.dictionary) ExtraFPNBlock (class in monai.networks.blocks) extreme_points_to_image() (in module monai.transforms.utils)

F

FactorizedIncreaseBlock (class in monai.networks.blocks) FactorizedReduceBlock (class in monai.networks.blocks) factory_function() (monai.networks.layers.LayerFactory method) fall_back_tuple() (in module monai.utils.misc) FastMRIKeys (class in monai.utils.enums) FastMRIReader (class in monai.apps.reconstruction.fastmri_reader) FCN (class in monai.networks.blocks) FeaturePyramidNetwork (class in monai.networks.blocks) Fetch2DSliced (class in monai.apps.deepgrow.transforms) fftn_centered() (in module monai.data.fft_utils) fftn_centered_t() (in module monai.networks.blocks.fft_utils_t) fftshift() (in module monai.networks.blocks.fft_utils_t) FgBgToIndices (class in monai.transforms) FgBgToIndicesd (class in monai.transforms) FgImageStats (class in monai.auto3dseg) FgImageStatsSumm (class in monai.auto3dseg) FIDMetric (class in monai.metrics) filename() (monai.data.folder_layout.FolderLayout method) (monai.data.folder_layout.FolderLayoutBase method) FilenameStats (class in monai.auto3dseg) fill_holes() (in module monai.transforms.utils) fill_template_config() (monai.apps.auto3dseg.BundleAlgo method) FillHoles (class in monai.transforms) FillHolesd (class in monai.transforms) filter() (monai.utils.dist.RankFilter method) filter_count() (monai.transforms.GridPatch method) (monai.transforms.RandGridPatch method) filter_threshold() (monai.transforms.GridPatch method) finalize() (monai.fl.client.BaseClient method) (monai.fl.client.MonaiAlgo method) (monai.inferers.AvgMerger method) (monai.inferers.Merger method) (monai.inferers.ZarrAvgMerger method) find_best_configuration() (monai.apps.nnunet.nnUNetV2Runner method) find_refs_in_config() (monai.bundle.ReferenceResolver class method) FindAllValidSlicesd (class in monai.apps.deepgrow.transforms) FindDiscrepancyRegionsd (class in monai.apps.deepgrow.transforms) first() (in module monai.utils.misc) first_key() (monai.transforms.MapTransform method) Flatten (class in monai.networks.layers) flatten() (monai.transforms.Compose method) (monai.transforms.OneOf method) flatten_meta_objs() (monai.data.meta_obj.MetaObj static method) FlattenSubKeysd (class in monai.transforms) FlexibleUNet (class in monai.networks.nets) Flip (class in monai.transforms) flip() (in module monai.transforms.spatial.functional) flip_boxes() (in module monai.apps.detection.transforms.box_ops) FlipBox (class in monai.apps.detection.transforms.array) FlipBoxd (class in monai.apps.detection.transforms.dictionary) FlipBoxD (in module monai.apps.detection.transforms.dictionary) FlipBoxDict (in module monai.apps.detection.transforms.dictionary) Flipd (class in monai.transforms) floor_ceil() (in module monai.apps.reconstruction.networks.nets.utils) floor_divide() (in module monai.transforms.utils_pytorch_numpy_unification) FocalLoss (class in monai.losses) FolderLayout (class in monai.data.folder_layout) FolderLayoutBase (class in monai.data.folder_layout) ForegroundMask (class in monai.transforms) ForegroundMaskd (class in monai.transforms) forward() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) (monai.apps.detection.networks.retinanet_network.RetinaNet method) (monai.apps.detection.networks.retinanet_network.RetinaNetClassificationHead method) (monai.apps.detection.networks.retinanet_network.RetinaNetRegressionHead method) (monai.apps.detection.utils.anchor_utils.AnchorGenerator method) (monai.apps.pathology.losses.hovernet_loss.HoVerNetLoss method) (monai.apps.reconstruction.networks.blocks.varnetblock.VarNetBlock method) (monai.apps.reconstruction.networks.nets.coil_sensitivity_model.CoilSensitivityModel method) (monai.apps.reconstruction.networks.nets.complex_unet.ComplexUnet method) (monai.apps.reconstruction.networks.nets.varnet.VariationalNetworkModel method) (monai.losses.BarlowTwinsLoss method) (monai.losses.BendingEnergyLoss method) (monai.losses.ContrastiveLoss method) (monai.losses.DeepSupervisionLoss method) (monai.losses.DiceCELoss method) (monai.losses.DiceFocalLoss method) (monai.losses.DiceLoss method) (monai.losses.DiffusionLoss method) (monai.losses.FocalLoss method) (monai.losses.GeneralizedDiceFocalLoss method) (monai.losses.GeneralizedDiceLoss method) (monai.losses.GeneralizedWassersteinDiceLoss method) (monai.losses.GlobalMutualInformationLoss method) (monai.losses.HausdorffDTLoss method) (monai.losses.JukeboxLoss method) (monai.losses.LocalNormalizedCrossCorrelationLoss method) (monai.losses.MaskedDiceLoss method) (monai.losses.MaskedLoss method) (monai.losses.MultiScaleLoss method) (monai.losses.PatchAdversarialLoss method) (monai.losses.PerceptualLoss method) (monai.losses.SoftclDiceLoss method) (monai.losses.SoftDiceclDiceLoss method) (monai.losses.ssim_loss.SSIMLoss method) (monai.losses.SURELoss method) (monai.losses.TverskyLoss method) (monai.networks.blocks.BackboneWithFPN method) (monai.networks.blocks.ChannelSELayer method) (monai.networks.blocks.CRF method) (monai.networks.blocks.DenseBlock method) (monai.networks.blocks.DVF2DDF method) (monai.networks.blocks.ExtraFPNBlock method) (monai.networks.blocks.FactorizedReduceBlock method) (monai.networks.blocks.FCN method) (monai.networks.blocks.FeaturePyramidNetwork method) (monai.networks.blocks.GCN method) (monai.networks.blocks.GEGLU method) (monai.networks.blocks.LastLevelMaxPool method) (monai.networks.blocks.LastLevelP6P7 method) (monai.networks.blocks.LocalNetDownSampleBlock method) (monai.networks.blocks.LocalNetFeatureExtractorBlock method) (monai.networks.blocks.LocalNetUpSampleBlock method) (monai.networks.blocks.MaxAvgPool method) (monai.networks.blocks.MCFCN method) (monai.networks.blocks.MemoryEfficientSwish method) (monai.networks.blocks.Mish method) (monai.networks.blocks.MLPBlock method) (monai.networks.blocks.PatchEmbeddingBlock method) (monai.networks.blocks.Refine method) (monai.networks.blocks.RegistrationDownSampleBlock method) (monai.networks.blocks.RegistrationExtractionBlock method) (monai.networks.blocks.RegistrationResidualConvBlock method) (monai.networks.blocks.ResBlock method) (monai.networks.blocks.ResidualUnit method) (monai.networks.blocks.SABlock method) (monai.networks.blocks.SEBlock method) (monai.networks.blocks.SimpleASPP method) (monai.networks.blocks.SubpixelUpsample method) (monai.networks.blocks.Swish method) (monai.networks.blocks.TransformerBlock method) (monai.networks.blocks.UnetBasicBlock method) (monai.networks.blocks.UnetOutBlock method) (monai.networks.blocks.UnetrBasicBlock method) (monai.networks.blocks.UnetResBlock method) (monai.networks.blocks.UnetrPrUpBlock method) (monai.networks.blocks.UnetrUpBlock method) (monai.networks.blocks.UnetUpBlock method) (monai.networks.blocks.Warp method) (monai.networks.layers.AffineTransform method) (monai.networks.layers.BilateralFilter static method) (monai.networks.layers.ChannelPad method) (monai.networks.layers.ConjugateGradient method) (monai.networks.layers.Flatten method) (monai.networks.layers.GaussianFilter method) (monai.networks.layers.HilbertTransform method) (monai.networks.layers.LLTM method) (monai.networks.layers.MedianFilter method) (monai.networks.layers.Reshape method) (monai.networks.layers.SavitzkyGolayFilter method) (monai.networks.layers.SkipConnection method) (monai.networks.layers.TrainableBilateralFilter method) (monai.networks.layers.TrainableJointBilateralFilter method) (monai.networks.nets.AHNet method) (monai.networks.nets.AttentionUnet method) (monai.networks.nets.AutoEncoder method) (monai.networks.nets.BasicUNet method) (monai.networks.nets.BasicUNetPlusPlus method) (monai.networks.nets.Critic method) (monai.networks.nets.DAF3D method) (monai.networks.nets.DenseNet method) (monai.networks.nets.DiNTS method) (monai.networks.nets.DynUNet method) (monai.networks.nets.EfficientNet method) (monai.networks.nets.EfficientNetBNFeatures method) (monai.networks.nets.FlexibleUNet method) (monai.networks.nets.Generator method) (monai.networks.nets.HighResBlock method) (monai.networks.nets.HighResNet method) (monai.networks.nets.MILModel method) (monai.networks.nets.NetAdapter method) (monai.networks.nets.Quicknat method) (monai.networks.nets.Regressor method) (monai.networks.nets.RegUNet method) (monai.networks.nets.ResNet method) (monai.networks.nets.ResNetFeatures method) (monai.networks.nets.SegResNet method) (monai.networks.nets.SegResNetDS method) (monai.networks.nets.SegResNetVAE method) (monai.networks.nets.SENet method) (monai.networks.nets.SwinUNETR method) (monai.networks.nets.TopologyConstruction method) (monai.networks.nets.TopologyInstance method) (monai.networks.nets.TopologySearch method) (monai.networks.nets.Transchex method) (monai.networks.nets.UNet method) (monai.networks.nets.UNETR method) (monai.networks.nets.VarAutoEncoder method) (monai.networks.nets.VarFullyConnectedNet method) (monai.networks.nets.ViT method) (monai.networks.nets.ViTAutoEnc method) (monai.networks.nets.VNet method) (monai.networks.nets.VoxelMorph method) (monai.networks.nets.VoxelMorphUNet method)

ForwardMode (class in monai.utils.enums) Fourier (class in monai.transforms.utils) from_engine() (in module monai.handlers.utils) from_string() (monai.networks.nets.BlockArgs static method) FromMetaTensord (class in monai.transforms) FullyConnectedNet (class in monai.networks.nets) FunctionSignature (class in monai.transforms.adaptors)

G

GanKeys (class in monai.utils.enums) GanTrainer (class in monai.engines) GarbageCollector (class in monai.handlers) gaussian_1d() (in module monai.networks.layers.convutils) gaussian_occlusion() (monai.visualize.occlusion_sensitivity.OcclusionSensitivity static method) GaussianFilter (class in monai.networks.layers) GaussianMixtureModel (class in monai.networks.layers) GaussianSharpen (class in monai.transforms) GaussianSharpend (class in monai.transforms) GaussianSmooth (class in monai.transforms) GaussianSmoothd (class in monai.transforms) GCN (class in monai.networks.blocks) GDSDataset (class in monai.data) GEGLU (class in monai.networks.blocks) gen_mtx() (monai.networks.nets.TopologySearch method) generalized_dice (in module monai.losses) generalized_wasserstein_dice (in module monai.losses) GeneralizedDiceFocalLoss (class in monai.losses) GeneralizedDiceLoss (class in monai.losses) GeneralizedDiceScore (class in monai.metrics) GeneralizedWassersteinDiceLoss (class in monai.losses) generate() (monai.apps.auto3dseg.BundleGen method) (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) (monai.auto3dseg.AlgoGen method) generate_anchors() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) (monai.apps.detection.utils.anchor_utils.AnchorGenerator method) generate_anchors_using_shape() (monai.apps.detection.utils.anchor_utils.AnchorGeneratorWithAnchorShape static method) generate_item() (monai.data.ShuffleBuffer method) generate_label_classes_crop_centers() (in module monai.transforms.utils) generate_param_groups() (in module monai.optimizers) generate_pos_neg_label_crop_centers() (in module monai.transforms.utils) generate_spatial_bounding_box() (in module monai.transforms.utils) GenerateDistanceMap (class in monai.apps.pathology.transforms.post.array) GenerateDistanceMapd (class in monai.apps.pathology.transforms.post.dictionary) GenerateInstanceBorder (class in monai.apps.pathology.transforms.post.array) GenerateInstanceBorderd (class in monai.apps.pathology.transforms.post.dictionary) GenerateInstanceCentroid (class in monai.apps.pathology.transforms.post.array) GenerateInstanceCentroidd (class in monai.apps.pathology.transforms.post.dictionary) GenerateInstanceContour (class in monai.apps.pathology.transforms.post.array) GenerateInstanceContourd (class in monai.apps.pathology.transforms.post.dictionary) GenerateInstanceType (class in monai.apps.pathology.transforms.post.array) GenerateInstanceTyped (class in monai.apps.pathology.transforms.post.dictionary) GenerateSuccinctContour (class in monai.apps.pathology.transforms.post.array) GenerateSuccinctContourd (class in monai.apps.pathology.transforms.post.dictionary) GenerateWatershedMarkers (class in monai.apps.pathology.transforms.post.array) GenerateWatershedMarkersd (class in monai.apps.pathology.transforms.post.dictionary) GenerateWatershedMask (class in monai.apps.pathology.transforms.post.array) GenerateWatershedMaskd (class in monai.apps.pathology.transforms.post.dictionary) Generator (class in monai.networks.nets) get() (monai.bundle.ConfigParser method) get_act_layer() (in module monai.networks.layers.utils) get_algo() (monai.apps.auto3dseg.AlgoEnsemble method) get_algo_ensemble() (monai.apps.auto3dseg.AlgoEnsemble method) get_all_bundles_list() (in module monai.bundle) get_all_case_stats() (monai.apps.auto3dseg.DataAnalyzer method) get_array() (monai.data.MetaTensor method) get_box_train_sample_per_image() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) get_boxmode() (in module monai.data.box_utils) get_budget() (monai.auto3dseg.AlgoGen method) get_buffer() (monai.metrics.Cumulative method) get_bundle_info() (in module monai.bundle) get_bundle_versions() (in module monai.bundle) get_cls_train_sample_per_image() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) get_code_to_measure_table() (in module monai.metrics.utils) get_component_module_name() (monai.bundle.ComponentLocator method) get_config() (monai.bundle.ConfigItem method) get_confusion_matrix() (in module monai.metrics) get_constructor() (monai.networks.layers.LayerFactory method) get_counts() (monai.inferers.AvgMerger method) (monai.inferers.ZarrAvgMerger method) get_current() (monai.metrics.CumulativeAverage method) get_data() (monai.apps.reconstruction.fastmri_reader.FastMRIReader method) (monai.data.BaseWSIReader method) (monai.data.ImageReader method) (monai.data.ITKReader method) (monai.data.NibabelReader method) (monai.data.NrrdReader method) (monai.data.NumpyReader method) (monai.data.PILReader method) get_data_src() (monai.apps.auto3dseg.BundleGen method) get_data_stats() (monai.apps.auto3dseg.BundleGen method) (monai.auto3dseg.AlgoGen method) (monai.fl.client.ClientAlgoStats method) (monai.fl.client.MonaiAlgoStats method) get_dataset() (monai.apps.CrossValidation method) get_default_applied_operations() (monai.data.meta_obj.MetaObj static method) get_default_meta() (monai.data.meta_obj.MetaObj static method) get_devices_spec() (in module monai.engines.utils) get_dist_device() (in module monai.utils.dist) get_downsample_ratio() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader method) (monai.data.OpenSlideWSIReader method) (monai.data.TiffFileWSIReader method) (monai.data.WSIReader method) get_dropout_layer() (in module monai.networks.layers.utils) get_dtype() (in module monai.utils.type_conversion) get_ensemble() (monai.apps.auto3dseg.AlgoEnsembleBuilder method) get_equivalent_dtype() (in module monai.utils.type_conversion) get_extra_metadata_keys() (in module monai.data.utils) get_extreme_points() (in module monai.transforms.utils) get_file_path() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader static method) (monai.data.OpenSlideWSIReader static method) (monai.data.TiffFileWSIReader static method) (monai.data.WSIReader method) get_foreground_image() (in module monai.auto3dseg) get_foreground_label() (in module monai.auto3dseg) get_full_type_name() (in module monai.utils.module) get_fully_sampled_region() (monai.apps.reconstruction.networks.nets.coil_sensitivity_model.CoilSensitivityModel method) get_history() (monai.apps.auto3dseg.BundleGen method) (monai.auto3dseg.AlgoGen method) get_hyperparameters() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) get_id() (monai.bundle.ConfigItem method) get_identity_grid() (monai.transforms.RandAffine method) get_index_of_first() (monai.transforms.Compose method) get_indices() (monai.apps.DecathlonDataset method) (monai.apps.TciaDataset method) get_inferer() (monai.apps.auto3dseg.BundleAlgo method)

get_input_shape() (monai.inferers.SlidingWindowSplitter method) (monai.inferers.Splitter method) (monai.inferers.WSISlidingWindowSplitter method) get_item() (monai.bundle.ReferenceResolver method) get_itk_image_center() (in module monai.data.itk_torch_bridge) get_label_ccp() (in module monai.auto3dseg) get_largest_connected_component_mask() (in module monai.transforms.utils) get_layer() (monai.visualize.class_activation_maps.ModelWithHooks method) get_level_count() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader static method) (monai.data.OpenSlideWSIReader static method) (monai.data.TiffFileWSIReader static method) (monai.data.WSIReader method) get_loss() (monai.losses.DeepSupervisionLoss method) get_lrs_and_losses() (monai.optimizers.LearningRateFinder method) get_mask_edges() (in module monai.metrics.utils) get_meta_info() (monai.data.ImageWriter class method) (monai.data.PILWriter class method) get_mlflow_experiment_name() (monai.apps.auto3dseg.BundleGen method) get_mlflow_tracking_uri() (monai.apps.auto3dseg.BundleGen method) get_most_recent_transform() (monai.transforms.TraceableTransform method) get_mpp() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader method) (monai.data.OpenSlideWSIReader method) (monai.data.TiffFileWSIReader method) (monai.data.WSIReader method) get_name() (monai.data.box_utils.BoxMode class method) get_name_from_algo_id() (in module monai.apps.auto3dseg) get_norm_layer() (in module monai.networks.layers.utils) get_num_classes() (monai.apps.MedNISTDataset method) get_num_neg() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSampler method) get_num_pos() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSampler method) get_number_image_type_conversions() (in module monai.transforms.utils) get_numpy_dtype_from_string() (in module monai.utils.type_conversion) get_obj_filename() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) get_output() (monai.inferers.AvgMerger method) (monai.inferers.ZarrAvgMerger method) get_output_path() (monai.apps.auto3dseg.BundleAlgo method) (monai.auto3dseg.Algo method) get_package_version() (in module monai.utils.module) get_padded_shape() (monai.inferers.SlidingWindowSplitter method) (monai.inferers.Splitter method) get_parsed_content() (monai.bundle.ConfigParser method) get_pool_layer() (in module monai.networks.layers.utils) get_power() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader method) (monai.data.OpenSlideWSIReader method) (monai.data.TiffFileWSIReader method) (monai.data.WSIReader method) get_prob_a() (monai.networks.nets.TopologySearch method) get_properties() (monai.apps.DecathlonDataset method) get_ram_cost_usage() (monai.networks.nets.TopologySearch method) get_random_patch() (in module monai.data.utils) get_report_format() (monai.auto3dseg.Analyzer method) get_resolved_content() (monai.bundle.ReferenceResolver method) get_result_from_inner_blocks() (monai.networks.blocks.FeaturePyramidNetwork method) get_result_from_layer_blocks() (monai.networks.blocks.FeaturePyramidNetwork method) get_results() (monai.utils.profiling.WorkflowProfiler method) get_saver() (monai.transforms.SaveClassificationd method) get_score() (monai.apps.auto3dseg.BundleAlgo method) (monai.auto3dseg.Algo method) get_selayer() (monai.networks.nets.Quicknat method) get_size() (monai.data.BaseWSIReader method) (monai.data.CuCIMWSIReader method) (monai.data.OpenSlideWSIReader method) (monai.data.TiffFileWSIReader method) (monai.data.WSIReader method) get_spatial_dims() (in module monai.data.box_utils) get_state_dict() (in module monai.networks.utils) get_stats() (monai.engines.Evaluator method) (monai.engines.Trainer method) (monai.engines.Workflow method) get_steepest_gradient() (monai.optimizers.LearningRateFinder method) get_surface_distance() (in module monai.metrics.utils) get_system_info() (in module monai.config.deviceconfig) get_target_tensor() (monai.losses.PatchAdversarialLoss method) get_task_id() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) get_times_summary() (monai.utils.profiling.WorkflowProfiler method) get_times_summary_pd() (monai.utils.profiling.WorkflowProfiler method) get_topology_entropy() (monai.networks.nets.TopologySearch method) get_torch_dtype_from_string() (in module monai.utils.type_conversion) get_torch_version_tuple() (in module monai.utils.module) get_track_meta() (in module monai.data.meta_obj) get_transform_backends() (in module monai.transforms.utils) get_transform_info() (monai.transforms.TraceableTransform method) get_transformation_matrix() (monai.transforms.RandAffineGrid method) get_unique_labels() (in module monai.transforms.utils) get_valid_level() (monai.data.BaseWSIReader method) get_valid_patch_size() (in module monai.data.utils) get_values() (monai.inferers.AvgMerger method) (monai.inferers.ZarrAvgMerger method) get_weights() (monai.fl.client.ClientAlgo method) (monai.fl.client.MonaiAlgo method) (monai.losses.DeepSupervisionLoss method) get_zero_tensor() (monai.losses.PatchAdversarialLoss method) GibbsNoise (class in monai.transforms) GibbsNoised (class in monai.transforms) GlobalMutualInformationLoss (class in monai.losses) GlobalNet (class in monai.networks.nets) GradCAM (class in monai.visualize.class_activation_maps) GradCAMpp (class in monai.visualize.class_activation_maps) grid_anchors() (monai.apps.detection.utils.anchor_utils.AnchorGenerator method) grid_count() (in module monai.networks.layers) grid_grad() (in module monai.networks.layers) grid_pull() (in module monai.networks.layers) grid_push() (in module monai.networks.layers) GridDistortion (class in monai.transforms) GridDistortiond (class in monai.transforms) GridPatch (class in monai.transforms) GridPatchd (class in monai.transforms) GridPatchDataset (class in monai.data) GridPatchSort (class in monai.utils.enums) GridSampleMode (class in monai.utils.enums) GridSamplePadMode (class in monai.utils.enums) GridSplit (class in monai.transforms) GridSplitd (class in monai.transforms) GuidedBackpropGrad (class in monai.visualize.gradient_based) GuidedBackpropSmoothGrad (class in monai.visualize.gradient_based)

H

HardNegativeSampler (class in monai.apps.detection.utils.hard_negative_sampler) HardNegativeSamplerBase (class in monai.apps.detection.utils.hard_negative_sampler) has_nvfuser_instance_norm() (in module monai.networks.utils) has_option() (in module monai.utils.misc) has_pending_operations (monai.data.meta_obj.MetaObj property) has_status_keys() (in module monai.transforms.utils) HausdorffDistance (class in monai.handlers) HausdorffDistanceMetric (class in monai.metrics) HausdorffDTLoss (class in monai.losses) HighResBlock (class in monai.networks.nets)

HighResNet (class in monai.networks.nets) HilbertTransform (class in monai.networks.layers) HistogramNormalize (class in monai.transforms) HistogramNormalized (class in monai.transforms) HoVerNetBranch (class in monai.utils.enums) HoVerNetInstanceMapPostProcessing (class in monai.apps.pathology.transforms.post.array) HoVerNetInstanceMapPostProcessingd (class in monai.apps.pathology.transforms.post.dictionary) HoVerNetLoss (class in monai.apps.pathology.losses.hovernet_loss) HoVerNetMode (class in monai.utils.enums) HoVerNetNuclearTypePostProcessing (class in monai.apps.pathology.transforms.post.array) HoVerNetNuclearTypePostProcessingd (class in monai.apps.pathology.transforms.post.dictionary)

I

icnr_init() (in module monai.networks.utils) id_skip (monai.networks.nets.BlockArgs attribute) Identity (class in monai.transforms) Identityd (class in monai.transforms) ifftn_centered() (in module monai.data.fft_utils) ifftn_centered_t() (in module monai.networks.blocks.fft_utils_t) ifftshift() (in module monai.networks.blocks.fft_utils_t) IgniteInfo (class in monai.config.deviceconfig) IgniteMetricHandler (class in monai.handlers) ignore_background() (in module monai.metrics.utils) ImageDataset (class in monai.data) ImageFilter (class in monai.transforms) ImageFilterd (class in monai.transforms) ImageMetaKey (class in monai.utils.misc) ImageReader (class in monai.data) ImageStats (class in monai.auto3dseg) ImageStatsKeys (class in monai.utils.enums) ImageStatsSumm (class in monai.auto3dseg) ImageWriter (class in monai.data) img_bounds() (in module monai.transforms.utils) import_bundle_algo_history() (in module monai.apps.auto3dseg) in1d() (in module monai.transforms.utils_pytorch_numpy_unification) in_bounds() (in module monai.transforms.utils) Inferer (class in monai.inferers) info() (monai.data.LMDBDataset method) init_bundle() (in module monai.bundle) initialize() (monai.fl.client.BaseClient method) (monai.fl.client.MonaiAlgo method) (monai.fl.client.MonaiAlgoStats method) input_filters (monai.networks.nets.BlockArgs attribute) inspect_datalist_folds() (monai.apps.auto3dseg.AutoRunner method) Instantiable (class in monai.bundle) instantiate() (in module monai.utils.module) (monai.bundle.ConfigComponent method) (monai.bundle.Instantiable method) IntensityStats (class in monai.transforms) IntensityStatsd (class in monai.transforms) Interaction (class in monai.apps.deepgrow.interaction) InterpolateMode (class in monai.utils.enums) interval_completed() (monai.handlers.CheckpointSaver method) inv_shift_fourier() (monai.transforms.utils.Fourier static method) InvalidPyTorchVersionError inverse() (monai.apps.detection.transforms.dictionary.AffineBoxToImageCoordinated method) (monai.apps.detection.transforms.dictionary.ConvertBoxModed method) (monai.apps.detection.transforms.dictionary.ConvertBoxToStandardModed method) (monai.apps.detection.transforms.dictionary.FlipBoxd method) (monai.apps.detection.transforms.dictionary.RandFlipBoxd method) (monai.apps.detection.transforms.dictionary.RandRotateBox90d method) (monai.apps.detection.transforms.dictionary.RandZoomBoxd method) (monai.apps.detection.transforms.dictionary.RotateBox90d method) (monai.apps.detection.transforms.dictionary.StandardizeEmptyBoxd method) (monai.apps.detection.transforms.dictionary.ZoomBoxd method) (monai.transforms.Affine method) (monai.transforms.Affined method) (monai.transforms.Compose method) (monai.transforms.Crop method) (monai.transforms.Cropd method) (monai.transforms.CropForeground method) (monai.transforms.Flip method) (monai.transforms.Flipd method) (monai.transforms.FromMetaTensord method) (monai.transforms.InvertibleTransform method) (monai.transforms.Lambda method) (monai.transforms.Lambdad method) (monai.transforms.OneOf method) (monai.transforms.Orientation method) (monai.transforms.Orientationd method) (monai.transforms.Pad method) (monai.transforms.Padd method) (monai.transforms.PadListDataCollate static method) (monai.transforms.RandAffine method) (monai.transforms.RandAffined method) (monai.transforms.RandAxisFlip method) (monai.transforms.RandAxisFlipd method) (monai.transforms.RandFlip method) (monai.transforms.RandFlipd method) (monai.transforms.RandLambda method) (monai.transforms.RandLambdad method) (monai.transforms.RandomOrder method) (monai.transforms.RandRotate method) (monai.transforms.RandRotate90 method) (monai.transforms.RandRotate90d method) (monai.transforms.RandRotated method) (monai.transforms.RandZoom method) (monai.transforms.RandZoomd method) (monai.transforms.ResampleToMatchd method) (monai.transforms.Resize method) (monai.transforms.Resized method) (monai.transforms.ResizeWithPadOrCrop method) (monai.transforms.Rotate method) (monai.transforms.Rotate90 method) (monai.transforms.Rotate90d method) (monai.transforms.Rotated method) (monai.transforms.SomeOf method) (monai.transforms.Spacing method) (monai.transforms.Spacingd method) (monai.transforms.SpatialResample method) (monai.transforms.SpatialResampled method) (monai.transforms.ToMetaTensord method) (monai.transforms.ToTensord method) (monai.transforms.Transposed method) (monai.transforms.Zoom method) (monai.transforms.Zoomd method)

inverse_divisible_pad_t() (in module monai.apps.reconstruction.networks.nets.utils) inverse_update() (monai.transforms.InvertibleTransform method) Invertd (class in monai.transforms) InvertibleTransform (class in monai.transforms) is_batch (monai.data.meta_obj.MetaObj property) is_binary_tensor() (in module monai.metrics.utils) is_cuda (monai.networks.nets.Quicknat property) is_disabled() (monai.bundle.ConfigComponent method) (monai.bundle.Instantiable method) is_empty() (in module monai.transforms.utils) is_expression() (monai.bundle.ConfigExpression class method) is_immutable() (in module monai.utils.misc) is_import_statement() (monai.bundle.ConfigExpression class method) is_instantiable() (monai.bundle.ConfigComponent static method) is_module_ver_at_least() (in module monai.utils.misc) is_no_channel() (in module monai.data.utils) is_positive() (in module monai.transforms.utils) is_started() (monai.data.SmartCacheDataset method) is_supported_format() (in module monai.data.utils) is_valid_box_values() (in module monai.data.box_utils) is_valid_shape() (monai.networks.nets.SegResNetDS method) isfinite() (in module monai.transforms.utils_pytorch_numpy_unification) isnan() (in module monai.transforms.utils_pytorch_numpy_unification) issequenceiterable() (in module monai.utils.misc) iter_patch() (in module monai.data.utils) iter_patch_position() (in module monai.data.utils) iter_patch_slices() (in module monai.data.utils) iter_subconfigs() (monai.bundle.ReferenceResolver class method) IterableDataset (class in monai.data) iteration_completed() (monai.handlers.MLFlowHandler method) (monai.handlers.StatsHandler method) (monai.handlers.TensorBoardStatsHandler method) IterationEvents (class in monai.engines.utils) IterationMetric (class in monai.metrics) itk_image_to_metatensor() (in module monai.data.itk_torch_bridge) itk_to_monai_affine() (in module monai.data.itk_torch_bridge) ITKReader (class in monai.data) ITKWriter (class in monai.data)

J

json_hashing() (in module monai.data.utils)

JukeboxLoss (class in monai.losses)

K

KeepLargestConnectedComponent (class in monai.transforms) KeepLargestConnectedComponentd (class in monai.transforms) kernel_size (monai.networks.nets.BlockArgs attribute)

key_iterator() (monai.transforms.MapTransform method) KspaceMask (class in monai.apps.reconstruction.transforms.array) KSpaceSpikeNoise (class in monai.transforms) KSpaceSpikeNoised (class in monai.transforms)

L

label_quality_score() (in module monai.metrics) label_union() (in module monai.utils.misc) LabelFilter (class in monai.transforms) LabelFilterd (class in monai.transforms) LabelQualityScore (class in monai.metrics) LabelStats (class in monai.auto3dseg) LabelStatsKeys (class in monai.utils.enums) LabelStatsSumm (class in monai.auto3dseg) LabelToContour (class in monai.transforms) LabelToContourd (class in monai.transforms) LabelToMask (class in monai.transforms) LabelToMaskd (class in monai.transforms) Lambda (class in monai.transforms) Lambdad (class in monai.transforms) LastLevelMaxPool (class in monai.networks.blocks) LastLevelP6P7 (class in monai.networks.blocks) LayerFactory (class in monai.networks.layers) lazy (monai.transforms.Affine property) (monai.transforms.Affined property) (monai.transforms.Compose property) (monai.transforms.Cropd property) (monai.transforms.CropForeground property) (monai.transforms.CropForegroundd property) (monai.transforms.Flipd property) (monai.transforms.LazyTrait property) (monai.transforms.LazyTransform property) (monai.transforms.Orientationd property) (monai.transforms.Padd property) (monai.transforms.RandAffine property) (monai.transforms.RandAffined property) (monai.transforms.RandAxisFlip property) (monai.transforms.RandAxisFlipd property) (monai.transforms.RandCropByLabelClasses property) (monai.transforms.RandCropByLabelClassesd property) (monai.transforms.RandCropByPosNegLabel property) (monai.transforms.RandCropByPosNegLabeld property) (monai.transforms.RandFlip property) (monai.transforms.RandFlipd property) (monai.transforms.RandRotated property) (monai.transforms.RandSpatialCropSamples property) (monai.transforms.RandSpatialCropSamplesd property) (monai.transforms.RandWeightedCrop property) (monai.transforms.RandWeightedCropd property) (monai.transforms.RandZoomd property) (monai.transforms.ResampleToMatchd property) (monai.transforms.Resized property) (monai.transforms.ResizeWithPadOrCrop property) (monai.transforms.Rotate90d property) (monai.transforms.Rotated property) (monai.transforms.Spacing property) (monai.transforms.Spacingd property) (monai.transforms.SpatialResampled property) (monai.transforms.Zoomd property)

LazyAttr (class in monai.utils.enums) LazyTrait (class in monai.transforms) LazyTransform (class in monai.transforms) LearningRateFinder (class in monai.optimizers) LesionFROC (class in monai.apps.pathology.metrics) LinearLR (class in monai.optimizers) list_data_collate() (in module monai.data.utils) list_to_dict() (in module monai.utils.misc) LLTM (class in monai.networks.layers) LMDBDataset (class in monai.data) load() (in module monai.bundle) load_config_file() (monai.bundle.ConfigParser class method) load_config_files() (monai.bundle.ConfigParser class method) load_decathlon_datalist() (in module monai.data) load_decathlon_properties() (in module monai.data) load_from_mmar() (in module monai.apps) load_state_dict() (monai.handlers.CheckpointSaver method) load_submodules() (in module monai.utils.module) LoadImage (class in monai.transforms) LoadImaged (class in monai.transforms) LocalNet (class in monai.networks.nets) LocalNetDownSampleBlock (class in monai.networks.blocks) LocalNetFeatureExtractorBlock (class in monai.networks.blocks) LocalNetUpSampleBlock (class in monai.networks.blocks) LocalNormalizedCrossCorrelationLoss (class in monai.losses) log_metrics() (monai.handlers.MetricLogger method) LogfileHandler (class in monai.handlers) look_up_named_module() (in module monai.networks.utils) look_up_option() (in module monai.utils.module) LossMetric (class in monai.metrics) LossReduction (class in monai.utils.enums) LrScheduleHandler (class in monai.handlers)

M

MAEMetric (class in monai.metrics) make_animated_gif_summary() (in module monai.visualize.img2tensorboard) manage_replacement() (monai.data.SmartCacheDataset method) map_binary_to_indices() (in module monai.transforms.utils) map_classes_to_indices() (in module monai.transforms.utils) map_spatial_axes() (in module monai.transforms.utils) MapLabelValue (class in monai.transforms) MapLabelValued (class in monai.transforms) MapTransform (class in monai.transforms) Mark (class in monai.transforms) MarkHandler (class in monai.handlers.nvtx_handlers) MaskedDiceLoss (class in monai.losses) MaskedLoss (class in monai.losses) MaskedPatchWSIDataset (class in monai.data) MaskIntensity (class in monai.transforms) MaskIntensityd (class in monai.transforms) MaskToBox (class in monai.apps.detection.transforms.array) MaskToBoxd (class in monai.apps.detection.transforms.dictionary) MaskToBoxD (in module monai.apps.detection.transforms.dictionary) MaskToBoxDict (in module monai.apps.detection.transforms.dictionary) match_refs_pattern() (monai.bundle.ReferenceResolver class method) Matcher (class in monai.apps.detection.utils.ATSS_matcher) matching_batch() (in module monai.apps.detection.metrics.matching) matshow3d() (in module monai.visualize.utils) max() (in module monai.transforms.utils_pytorch_numpy_unification) MaxAvgPool (class in monai.networks.blocks) maximum() (in module monai.transforms.utils_pytorch_numpy_unification) MCFCN (class in monai.networks.blocks) mean() (in module monai.transforms.utils_pytorch_numpy_unification) MeanAbsoluteError (class in monai.handlers) MeanDice (class in monai.handlers) MeanEnsemble (class in monai.transforms) MeanEnsembled (class in monai.transforms) MeanIoU (class in monai.metrics) MeanIoUHandler (class in monai.handlers) MeanSquaredError (class in monai.handlers) median() (in module monai.transforms.utils_pytorch_numpy_unification) median_filter (class in monai.networks.layers) MedianFilter (class in monai.networks.layers) MedianSmooth (class in monai.transforms) MedianSmoothd (class in monai.transforms) MedNISTDataset (class in monai.apps) MemoryEfficientSwish (class in monai.networks.blocks) Merger (class in monai.inferers) meta (monai.data.meta_obj.MetaObj property) MetaKeys (class in monai.utils.enums) MetaObj (class in monai.data.meta_obj) MetaTensor (class in monai.data) metatensor_to_itk_image() (in module monai.data.itk_torch_bridge) Method (class in monai.utils.enums) MethodReplacer (class in monai.utils.decorators) Metric (class in monai.metrics) MetricLogger (class in monai.handlers) MetricReduction (class in monai.utils.enums) metrics_completed() (monai.handlers.CheckpointSaver method) MetricsReloadedBinary (class in monai.metrics) MetricsReloadedBinaryHandler (class in monai.handlers) MetricsReloadedCategorical (class in monai.metrics) MetricsReloadedCategoricalHandler (class in monai.handlers) MetricsSaver (class in monai.handlers) MILModel (class in monai.networks.nets) min() (in module monai.transforms.utils_pytorch_numpy_unification) min_version() (in module monai.utils.module) Mish (class in monai.networks.blocks) MixUp (class in monai.transforms) MixUpd (class in monai.transforms) MLFlowHandler (class in monai.handlers) MLPBlock (class in monai.networks.blocks) MMDMetric (class in monai.metrics) mode() (in module monai.transforms.utils_pytorch_numpy_unification) MODEL_DESC (in module monai.apps) ModelWithHooks (class in monai.visualize.class_activation_maps) module monai monai.apps.auto3dseg monai.apps.deepgrow.dataset monai.apps.deepgrow.interaction monai.apps.deepgrow.transforms monai.apps.detection.metrics.coco monai.apps.detection.metrics.matching monai.apps.detection.networks.retinanet_detector monai.apps.detection.networks.retinanet_network monai.apps.detection.transforms.array monai.apps.detection.transforms.box_ops monai.apps.detection.transforms.dictionary monai.apps.detection.utils.anchor_utils monai.apps.detection.utils.ATSS_matcher monai.apps.detection.utils.box_coder monai.apps.detection.utils.box_selector monai.apps.detection.utils.detector_utils monai.apps.detection.utils.hard_negative_sampler monai.apps.detection.utils.predict_utils monai.apps.nnunet.__main__ monai.apps.pathology.inferers monai.apps.pathology.losses.hovernet_loss monai.apps.pathology.metrics monai.apps.pathology.transforms.post.array monai.apps.pathology.transforms.post.dictionary monai.apps.pathology.transforms.stain.array monai.apps.pathology.transforms.stain.dictionary monai.apps.pathology.utils monai.apps.reconstruction.networks.nets.utils monai.auto3dseg monai.config.deviceconfig monai.data.box_utils monai.data.fft_utils monai.data.folder_layout monai.data.itk_torch_bridge monai.data.meta_obj monai.data.synthetic monai.data.utils monai.engines.utils monai.handlers.nvtx_handlers monai.handlers.probability_maps monai.handlers.utils monai.losses monai.metrics.utils monai.networks.blocks monai.networks.blocks.fft_utils_t monai.networks.layers.Act monai.networks.layers.Conv monai.networks.layers.convutils monai.networks.layers.Dropout monai.networks.layers.factories monai.networks.layers.Norm monai.networks.layers.Pad monai.networks.layers.Pool monai.networks.layers.utils monai.networks.utils monai.transforms monai.transforms.adaptors monai.transforms.croppad.array monai.transforms.croppad.batch monai.transforms.croppad.dictionary monai.transforms.croppad.functional monai.transforms.intensity.array monai.transforms.intensity.dictionary monai.transforms.io.array monai.transforms.io.dictionary monai.transforms.lazy.array monai.transforms.lazy.dictionary monai.transforms.lazy.utils monai.transforms.meta_utility.dictionary monai.transforms.post.array monai.transforms.post.dictionary monai.transforms.regularization.array monai.transforms.regularization.dictionary monai.transforms.signal.array monai.transforms.smooth_field.array monai.transforms.smooth_field.dictionary monai.transforms.spatial.array monai.transforms.spatial.dictionary monai.transforms.spatial.functional monai.transforms.utility.array monai.transforms.utility.dictionary monai.transforms.utils monai.transforms.utils_pytorch_numpy_unification monai.utils.aliases monai.utils.decorators monai.utils.deprecate_utils monai.utils.dist monai.utils.enums monai.utils.jupyter_utils monai.utils.misc monai.utils.module monai.utils.nvtx monai.utils.profiling monai.utils.state_cacher monai.utils.type_conversion monai.visualize.class_activation_maps monai.visualize.gradient_based monai.visualize.img2tensorboard monai.visualize.occlusion_sensitivity monai.visualize.utils monai module monai.apps.auto3dseg module monai.apps.deepgrow.dataset module monai.apps.deepgrow.interaction module monai.apps.deepgrow.transforms module monai.apps.detection.metrics.coco module monai.apps.detection.metrics.matching module monai.apps.detection.networks.retinanet_detector module monai.apps.detection.networks.retinanet_network module monai.apps.detection.transforms.array module

monai.apps.detection.transforms.box_ops module monai.apps.detection.transforms.dictionary module monai.apps.detection.utils.anchor_utils module monai.apps.detection.utils.ATSS_matcher module monai.apps.detection.utils.box_coder module monai.apps.detection.utils.box_selector module monai.apps.detection.utils.detector_utils module monai.apps.detection.utils.hard_negative_sampler module monai.apps.detection.utils.predict_utils module monai.apps.nnunet.__main__ module monai.apps.pathology.inferers module monai.apps.pathology.losses.hovernet_loss module monai.apps.pathology.metrics module monai.apps.pathology.transforms.post.array module monai.apps.pathology.transforms.post.dictionary module monai.apps.pathology.transforms.stain.array module monai.apps.pathology.transforms.stain.dictionary module monai.apps.pathology.utils module monai.apps.reconstruction.networks.nets.utils module monai.auto3dseg module monai.config.deviceconfig module monai.data.box_utils module monai.data.fft_utils module monai.data.folder_layout module monai.data.itk_torch_bridge module monai.data.meta_obj module monai.data.synthetic module monai.data.utils module monai.engines.utils module monai.handlers.nvtx_handlers module monai.handlers.probability_maps module monai.handlers.utils module monai.losses module monai.metrics.utils module monai.networks.blocks module monai.networks.blocks.fft_utils_t module monai.networks.layers.Act module monai.networks.layers.Conv module monai.networks.layers.convutils module monai.networks.layers.Dropout module monai.networks.layers.factories module monai.networks.layers.Norm module monai.networks.layers.Pad module monai.networks.layers.Pool module monai.networks.layers.utils module monai.networks.utils module monai.transforms module monai.transforms.adaptors module monai.transforms.croppad.array module monai.transforms.croppad.batch module monai.transforms.croppad.dictionary module monai.transforms.croppad.functional module monai.transforms.intensity.array module monai.transforms.intensity.dictionary module monai.transforms.io.array module monai.transforms.io.dictionary module monai.transforms.lazy.array module monai.transforms.lazy.dictionary module monai.transforms.lazy.utils module monai.transforms.meta_utility.dictionary module monai.transforms.post.array module monai.transforms.post.dictionary module monai.transforms.regularization.array module monai.transforms.regularization.dictionary module monai.transforms.signal.array module monai.transforms.smooth_field.array module monai.transforms.smooth_field.dictionary module monai.transforms.spatial.array module monai.transforms.spatial.dictionary module monai.transforms.spatial.functional module monai.transforms.utility.array module monai.transforms.utility.dictionary module monai.transforms.utils module monai.transforms.utils_pytorch_numpy_unification module monai.utils.aliases module monai.utils.decorators module monai.utils.deprecate_utils module monai.utils.dist module monai.utils.enums module monai.utils.jupyter_utils module monai.utils.misc module monai.utils.module module monai.utils.nvtx module monai.utils.profiling module monai.utils.state_cacher module monai.utils.type_conversion module monai.visualize.class_activation_maps module monai.visualize.gradient_based module monai.visualize.img2tensorboard module monai.visualize.occlusion_sensitivity module monai.visualize.utils module monai_to_itk_affine() (in module monai.data.itk_torch_bridge) monai_to_itk_ddf() (in module monai.data.itk_torch_bridge) MonaiAlgo (class in monai.fl.client) MonaiAlgoStats (class in monai.fl.client) MONAIEnvVars (class in monai.utils.misc) moveaxis() (in module monai.transforms.utils_pytorch_numpy_unification) MSEMetric (class in monai.metrics) MultiSampleTrait (class in monai.transforms) MultiScaleLoss (class in monai.losses) MultiScaleSSIMMetric (class in monai.metrics)

N

names (monai.utils.component_store.ComponentStore property) NdimageMode (class in monai.utils.enums) NetAdapter (class in monai.networks.nets) network_wrapper() (monai.inferers.SliceInferer method) new_empty() (monai.data.MetaTensor method) NibabelReader (class in monai.data) NibabelWriter (class in monai.data) NNIGen (class in monai.apps.auto3dseg) nnUNetV2Runner (class in monai.apps.nnunet) no_collation() (in module monai.data.utils) non_max_suppression() (in module monai.data.box_utils) nonzero() (in module monai.transforms.utils_pytorch_numpy_unification) normal_init() (in module monai.networks.utils)

normalize_id() (monai.bundle.ReferenceResolver class method) normalize_transform() (in module monai.networks.utils) NormalizeHEStains (class in monai.apps.pathology.transforms.stain.array) NormalizeHEStainsd (class in monai.apps.pathology.transforms.stain.dictionary) NormalizeIntensity (class in monai.transforms) NormalizeIntensityd (class in monai.transforms) Novograd (class in monai.optimizers) NPZDictItemDataset (class in monai.data) NrrdReader (class in monai.data) num_anchors_per_location() (monai.apps.detection.utils.anchor_utils.AnchorGenerator method) num_repeat (monai.networks.nets.BlockArgs attribute) NumpyPadMode (class in monai.utils.enums) NumpyReader (class in monai.data)

O

OcclusionSensitivity (class in monai.visualize.occlusion_sensitivity) one_hot() (in module monai.networks.utils) OneOf (class in monai.transforms) onnx_export() (in module monai.bundle) OpenSlideWSIReader (class in monai.data) Operations (class in monai.auto3dseg) optional_import() (in module monai.utils.module)

OptionalImportError OptunaGen (class in monai.apps.auto3dseg) Orientation (class in monai.transforms) orientation() (in module monai.transforms.spatial.functional) orientation_ras_lps() (in module monai.data.utils) Orientationd (class in monai.transforms) output_filters (monai.networks.nets.BlockArgs attribute)

P

P3DActiConvNormBlock (class in monai.networks.blocks) Pad (class in monai.transforms) pad_func() (in module monai.transforms.croppad.functional) pad_images() (in module monai.apps.detection.utils.detector_utils) pad_list_data_collate() (in module monai.data.utils) pad_nd() (in module monai.transforms.croppad.functional) Padd (class in monai.transforms) PadListDataCollate (class in monai.transforms) PanopticQuality (class in monai.handlers) PanopticQualityMetric (class in monai.metrics) ParamSchedulerHandler (class in monai.handlers) parse() (monai.bundle.ConfigParser method) partition_dataset() (in module monai.data) (in module monai.data.utils) partition_dataset_classes() (in module monai.data) (in module monai.data.utils) parzen_windowing_b_spline() (monai.losses.GlobalMutualInformationLoss method) parzen_windowing_gaussian() (monai.losses.GlobalMutualInformationLoss method) PatchAdversarialLoss (class in monai.losses) PatchDataset (class in monai.data) PatchEmbeddingBlock (class in monai.networks.blocks) PatchInferer (class in monai.inferers) PatchIter (class in monai.data) PatchIterd (class in monai.data) PatchWSIDataset (class in monai.data) path_to_uri() (in module monai.utils.misc) PathologyProbNMS (class in monai.apps.pathology.utils) PeakSignalToNoiseRatio (class in monai.handlers) peek_pending_shape() (monai.data.MetaTensor method) pending_operations (monai.data.meta_obj.MetaObj property) percentile() (in module monai.transforms.utils_pytorch_numpy_unification) PerceptualLoss (class in monai.losses) PerfContext (class in monai.utils.profiling) PersistentDataset (class in monai.data) PHLFilter (class in monai.networks.layers) pickle_hashing() (in module monai.data.utils) PILReader (class in monai.data) PILWriter (class in monai.data) pixdim (monai.data.MetaTensor property) pixelshuffle() (in module monai.networks.utils) plan_and_process() (monai.apps.nnunet.nnUNetV2Runner method) plan_experiments() (monai.apps.nnunet.nnUNetV2Runner method) plot() (monai.optimizers.LearningRateFinder method) plot_2d_or_3d_image() (in module monai.visualize.img2tensorboard) plot_engine_status() (in module monai.utils.jupyter_utils)

plot_metric_graph() (in module monai.utils.jupyter_utils) plot_metric_images() (in module monai.utils.jupyter_utils) plot_status() (monai.utils.jupyter_utils.ThreadContainer method) polyval() (in module monai.networks.layers.convutils) pop_transform() (monai.transforms.TraceableTransform method) PostFix (class in monai.utils.enums) postprocess_detections() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) PostProcessing (class in monai.handlers) pprint_edges() (in module monai.utils.misc) pre_check_skip_algo() (monai.apps.auto3dseg.BundleAlgo method) predict() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.nnunet.nnUNetV2Runner method) (monai.auto3dseg.Algo method) predict_ensemble_postprocessing() (monai.apps.nnunet.nnUNetV2Runner method) predict_segmentation() (in module monai.networks.utils) predict_with_inferer() (in module monai.apps.detection.utils.predict_utils) predictor() (monai.visualize.occlusion_sensitivity.OcclusionSensitivity static method) prepare_ground_truth() (monai.apps.pathology.metrics.LesionFROC method) prepare_inference_result() (monai.apps.pathology.metrics.LesionFROC method) prepare_spacing() (in module monai.metrics.utils) PrepareBatch (class in monai.engines.utils) PrepareBatchDefault (class in monai.engines.utils) PrepareBatchExtraInput (class in monai.engines.utils) preprocess() (monai.apps.nnunet.nnUNetV2Runner method) preprocess_images() (in module monai.apps.detection.utils.detector_utils) print_bundle_algo_instruction() (monai.apps.auto3dseg.NNIGen method) print_config() (in module monai.config.deviceconfig) print_debug_info() (in module monai.config.deviceconfig) print_gpu_info() (in module monai.config.deviceconfig) print_system_info() (in module monai.config.deviceconfig) print_transform_backends() (in module monai.transforms.utils) print_verbose() (monai.data.MetaTensor method) ProbMapProducer (class in monai.handlers.probability_maps) ProbNMS (class in monai.transforms) ProbNMSd (class in monai.transforms) profile_callable() (monai.utils.profiling.WorkflowProfiler method) profile_ctx() (monai.utils.profiling.WorkflowProfiler method) profile_iter() (monai.utils.profiling.WorkflowProfiler method) ProfileHandler (class in monai.utils.profiling) progress_bar() (in module monai.utils.misc) PSNRMetric (class in monai.metrics) push_to_hf_hub() (in module monai.bundle) push_transform() (monai.transforms.TraceableTransform method) pytorch_after() (in module monai.utils.module) PytorchPadMode (class in monai.utils.enums)

Q

Quicknat (class in monai.networks.nets)

R

Rand2DElastic (class in monai.transforms) Rand2DElasticd (class in monai.transforms) Rand3DElastic (class in monai.transforms) Rand3DElasticd (class in monai.transforms) rand_choice() (in module monai.transforms.utils) RandAdjustContrast (class in monai.transforms) RandAdjustContrastd (class in monai.transforms) RandAffine (class in monai.transforms) RandAffined (class in monai.transforms) RandAffineGrid (class in monai.transforms) RandAxisFlip (class in monai.transforms) RandAxisFlipd (class in monai.transforms) RandBiasField (class in monai.transforms) RandBiasFieldd (class in monai.transforms) RandCoarseDropout (class in monai.transforms) RandCoarseDropoutd (class in monai.transforms) RandCoarseShuffle (class in monai.transforms) RandCoarseShuffled (class in monai.transforms) RandCoarseTransform (class in monai.transforms) RandCropBoxByPosNegLabeld (class in monai.apps.detection.transforms.dictionary) RandCropBoxByPosNegLabelD (in module monai.apps.detection.transforms.dictionary) RandCropBoxByPosNegLabelDict (in module monai.apps.detection.transforms.dictionary) RandCropByLabelClasses (class in monai.transforms) RandCropByLabelClassesd (class in monai.transforms) RandCropByPosNegLabel (class in monai.transforms) RandCropByPosNegLabeld (class in monai.transforms) RandCropd (class in monai.transforms) RandCuCIM (class in monai.transforms) RandCuCIMd (class in monai.transforms) RandDeformGrid (class in monai.transforms) RandFlip (class in monai.transforms) RandFlipBoxd (class in monai.apps.detection.transforms.dictionary) RandFlipBoxD (in module monai.apps.detection.transforms.dictionary) RandFlipBoxDict (in module monai.apps.detection.transforms.dictionary) RandFlipd (class in monai.transforms) RandGaussianNoise (class in monai.transforms) RandGaussianNoised (class in monai.transforms) RandGaussianSharpen (class in monai.transforms) RandGaussianSharpend (class in monai.transforms) RandGaussianSmooth (class in monai.transforms) RandGaussianSmoothd (class in monai.transforms) RandGibbsNoise (class in monai.transforms) RandGibbsNoised (class in monai.transforms) RandGridDistortion (class in monai.transforms) RandGridDistortiond (class in monai.transforms) RandGridPatch (class in monai.transforms) RandGridPatchd (class in monai.transforms) RandHistogramShift (class in monai.transforms) RandHistogramShiftd (class in monai.transforms) RandImageFilter (class in monai.transforms) RandImageFilterd (class in monai.transforms) RandKSpaceSpikeNoise (class in monai.transforms) RandKSpaceSpikeNoised (class in monai.transforms) RandLambda (class in monai.transforms) RandLambdad (class in monai.transforms) RandMark (class in monai.transforms) Randomizable (class in monai.transforms) RandomizableTrait (class in monai.transforms) RandomizableTransform (class in monai.transforms) randomize() (monai.apps.DecathlonDataset method) (monai.apps.deepgrow.transforms.AddInitialSeedPointd method) (monai.apps.deepgrow.transforms.AddRandomGuidanced method) (monai.apps.detection.transforms.dictionary.RandCropBoxByPosNegLabeld method) (monai.apps.detection.transforms.dictionary.RandRotateBox90d method) (monai.apps.MedNISTDataset method) (monai.apps.TciaDataset method) (monai.data.ArrayDataset method) (monai.data.ImageDataset method) (monai.data.ShuffleBuffer method) (monai.data.SmartCacheDataset method) (monai.transforms.AddExtremePointsChannel method) (monai.transforms.AddExtremePointsChanneld method) (monai.transforms.Compose method) (monai.transforms.Rand2DElastic method) (monai.transforms.Rand3DElastic method) (monai.transforms.RandAdjustContrast method) (monai.transforms.RandAffine method) (monai.transforms.RandAffineGrid method) (monai.transforms.RandAxisFlip method) (monai.transforms.RandBiasField method) (monai.transforms.RandCoarseTransform method) (monai.transforms.RandCropByLabelClasses method) (monai.transforms.RandCropByLabelClassesd method) (monai.transforms.RandCropByPosNegLabel method) (monai.transforms.RandCropByPosNegLabeld method) (monai.transforms.RandCropd method) (monai.transforms.RandDeformGrid method) (monai.transforms.RandGaussianNoise method) (monai.transforms.RandGaussianSharpen method) (monai.transforms.RandGaussianSmooth method) (monai.transforms.RandGibbsNoise method) (monai.transforms.RandGridDistortion method) (monai.transforms.RandGridPatch method) (monai.transforms.RandHistogramShift method) (monai.transforms.RandKSpaceSpikeNoise method) (monai.transforms.Randomizable method) (monai.transforms.RandomizableTransform method) (monai.transforms.RandRotate method) (monai.transforms.RandRotate90 method) (monai.transforms.RandRotate90d method) (monai.transforms.RandScaleCrop method) (monai.transforms.RandScaleIntensity method) (monai.transforms.RandScaleIntensityFixedMean method) (monai.transforms.RandShiftIntensity method) (monai.transforms.RandSimulateLowResolution method) (monai.transforms.RandSmoothDeform method) (monai.transforms.RandSmoothDeformd method) (monai.transforms.RandSmoothFieldAdjustContrast method) (monai.transforms.RandSmoothFieldAdjustContrastd method) (monai.transforms.RandSmoothFieldAdjustIntensity method) (monai.transforms.RandSmoothFieldAdjustIntensityd method) (monai.transforms.RandSpatialCrop method) (monai.transforms.RandSpatialCropSamples method) (monai.transforms.RandSpatialCropSamplesd method) (monai.transforms.RandStdShiftIntensity method) (monai.transforms.RandWeightedCrop method) (monai.transforms.RandWeightedCropd method) (monai.transforms.RandZoom method) randomize_choose_acceleration() (monai.apps.reconstruction.transforms.array.KspaceMask method) randomized_pop() (monai.data.ShuffleBuffer method) RandomKspaceMask (class in monai.apps.reconstruction.transforms.array) RandomKspaceMaskd (class in monai.apps.reconstruction.transforms.dictionary) RandomOrder (class in monai.transforms) RandRangePop (class in monai.transforms) RandRangePush (class in monai.transforms) RandRicianNoise (class in monai.transforms) RandRicianNoised (class in monai.transforms) RandRotate (class in monai.transforms) RandRotate90 (class in monai.transforms) RandRotate90d (class in monai.transforms) RandRotateBox90d (class in monai.apps.detection.transforms.dictionary) RandRotateBox90D (in module monai.apps.detection.transforms.dictionary) RandRotateBox90Dict (in module monai.apps.detection.transforms.dictionary) RandRotated (class in monai.transforms) RandScaleCrop (class in monai.transforms) RandScaleCropd (class in monai.transforms) RandScaleIntensity (class in monai.transforms) RandScaleIntensityd (class in monai.transforms) RandScaleIntensityFixedMean (class in monai.transforms) RandScaleIntensityFixedMeand (class in monai.transforms) RandShiftIntensity (class in monai.transforms) RandShiftIntensityd (class in monai.transforms) RandSimulateLowResolution (class in monai.transforms) RandSimulateLowResolutiond (class in monai.transforms) RandSmoothDeform (class in monai.transforms) RandSmoothDeformd (class in monai.transforms) RandSmoothFieldAdjustContrast (class in monai.transforms) RandSmoothFieldAdjustContrastd (class in monai.transforms) RandSmoothFieldAdjustIntensity (class in monai.transforms) RandSmoothFieldAdjustIntensityd (class in monai.transforms) RandSpatialCrop (class in monai.transforms) RandSpatialCropd (class in monai.transforms) RandSpatialCropSamples (class in monai.transforms) RandSpatialCropSamplesd (class in monai.transforms)

RandStdShiftIntensity (class in monai.transforms) RandStdShiftIntensityd (class in monai.transforms) RandTorchVisiond (class in monai.transforms) RandWeightedCrop (class in monai.transforms) RandWeightedCropd (class in monai.transforms) RandZoom (class in monai.transforms) RandZoomBoxd (class in monai.apps.detection.transforms.dictionary) RandZoomBoxD (in module monai.apps.detection.transforms.dictionary) RandZoomBoxDict (in module monai.apps.detection.transforms.dictionary) RandZoomd (class in monai.transforms) Range (class in monai.utils.nvtx) range_test() (monai.optimizers.LearningRateFinder method) RangeHandler (class in monai.handlers.nvtx_handlers) RangePop (class in monai.transforms) RangePopHandler (class in monai.handlers.nvtx_handlers) RangePush (class in monai.transforms) RangePushHandler (class in monai.handlers.nvtx_handlers) RankFilter (class in monai.utils.dist) ravel() (in module monai.transforms.utils_pytorch_numpy_unification) read() (monai.apps.reconstruction.fastmri_reader.FastMRIReader method) (monai.data.CuCIMWSIReader method) (monai.data.ImageReader method) (monai.data.ITKReader method) (monai.data.NibabelReader method) (monai.data.NrrdReader method) (monai.data.NumpyReader method) (monai.data.OpenSlideWSIReader method) (monai.data.PILReader method) (monai.data.TiffFileWSIReader method) (monai.data.WSIReader method) read_cache() (monai.apps.auto3dseg.AutoRunner method) read_config() (monai.bundle.ConfigParser method) read_meta() (monai.bundle.ConfigParser method) rectify_header_sform_qform() (in module monai.data.utils) ReferenceBasedNormalizeIntensityd (class in monai.apps.reconstruction.transforms.dictionary) ReferenceBasedSpatialCropd (class in monai.apps.reconstruction.transforms.dictionary) ReferenceResolver (class in monai.bundle) Refine (class in monai.networks.blocks) register() (monai.transforms.LoadImage method) (monai.transforms.LoadImaged method) register_writer() (in module monai.data) RegistrationDownSampleBlock (class in monai.networks.blocks) RegistrationExtractionBlock (class in monai.networks.blocks) RegistrationResidualConvBlock (class in monai.networks.blocks) Regressor (class in monai.networks.nets) RegUNet (class in monai.networks.nets) remap_instance_id() (in module monai.metrics.utils) remove_extra_metadata() (in module monai.data.utils) remove_keys() (in module monai.data.utils) remove_small_objects() (in module monai.transforms.utils) RemoveRepeatedChannel (class in monai.transforms) RemoveRepeatedChanneld (class in monai.transforms) RemoveSmallObjects (class in monai.transforms) RemoveSmallObjectsd (class in monai.transforms) reorient_spatial_axes() (in module monai.data.utils) repeat() (in module monai.transforms.utils_pytorch_numpy_unification) RepeatChannel (class in monai.transforms) RepeatChanneld (class in monai.transforms) replace_method() (monai.utils.decorators.MethodReplacer method) replace_modules() (in module monai.networks.utils) replace_modules_temp() (in module monai.networks.utils) require_pkg() (in module monai.utils.module) requires_current_data (monai.transforms.CropForeground property) (monai.transforms.CropForegroundd property) (monai.transforms.LazyTrait property) (monai.transforms.LazyTransform property) (monai.transforms.RandCropByLabelClasses property) (monai.transforms.RandCropByLabelClassesd property) (monai.transforms.RandCropByPosNegLabel property) (monai.transforms.RandCropByPosNegLabeld property) Resample (class in monai.transforms) resample_and_clip() (monai.data.PILWriter class method) resample_datalist() (in module monai.data.utils) resample_if_needed() (monai.data.ImageWriter class method) ResampleToMatch (class in monai.transforms) ResampleToMatchd (class in monai.transforms) ResBlock (class in monai.networks.blocks) rescale_array() (in module monai.transforms.utils) rescale_array_int_max() (in module monai.transforms.utils) rescale_instance_array() (in module monai.transforms.utils) reset() (monai.bundle.ReferenceResolver method) (monai.data.CSVIterableDataset method) (monai.data.DatasetFunc method) (monai.handlers.IgniteMetricHandler method) (monai.metrics.Cumulative method) (monai.metrics.CumulativeAverage method) (monai.optimizers.LearningRateFinder method) reset_ops_id() (in module monai.transforms.utils) Reshape (class in monai.networks.layers) reshape_batch_channel_to_channel_dim() (in module monai.apps.reconstruction.networks.nets.utils) reshape_channel_complex_to_last_dim() (in module monai.apps.reconstruction.networks.nets.utils) reshape_channel_to_batch_dim() (in module monai.apps.reconstruction.networks.nets.utils) reshape_complex_to_channel_dim() (in module monai.apps.reconstruction.networks.nets.utils) ResidualSELayer (class in monai.networks.blocks) ResidualUnit (class in monai.networks.blocks) Resize (class in monai.transforms) resize() (in module monai.transforms.spatial.functional) resize_boxes() (in module monai.apps.detection.transforms.box_ops) resize_center() (in module monai.transforms.utils) ResizeBox (class in monai.apps.detection.transforms.array) Resized (class in monai.transforms) ResizeGuidanced (class in monai.apps.deepgrow.transforms) ResizeWithPadOrCrop (class in monai.transforms) ResizeWithPadOrCropd (class in monai.transforms) ResNet (class in monai.networks.nets) resnet_fpn_feature_extractor() (in module monai.apps.detection.networks.retinanet_network) ResNetFeatures (class in monai.networks.nets) resolve_args() (monai.bundle.ConfigComponent method) resolve_events() (monai.handlers.nvtx_handlers.RangeHandler method) resolve_format() (monai.auto3dseg.Analyzer method) resolve_macro_and_relative_ids() (monai.bundle.ConfigParser method) resolve_module_name() (monai.bundle.ConfigComponent method) resolve_name() (in module monai.utils.aliases) resolve_relative_ids() (monai.bundle.ConfigParser class method) resolve_writer() (in module monai.data) resolves_modes() (in module monai.transforms.utils) RestartGenerator (class in monai.utils.decorators) RestoreLabeld (class in monai.apps.deepgrow.transforms) RetinaNet (class in monai.apps.detection.networks.retinanet_network) retinanet_resnet50_fpn_detector() (in module monai.apps.detection.networks.retinanet_detector) RetinaNetClassificationHead (class in monai.apps.detection.networks.retinanet_network) RetinaNetDetector (class in monai.apps.detection.networks.retinanet_detector) RetinaNetRegressionHead (class in monai.apps.detection.networks.retinanet_network) retrieve() (monai.utils.state_cacher.StateCacher method) RMSEMetric (class in monai.metrics) ROCAUC (class in monai.handlers) ROCAUCMetric (class in monai.metrics) roll() (in module monai.networks.blocks.fft_utils_t) roll_1d() (in module monai.networks.blocks.fft_utils_t) root_sum_of_squares() (in module monai.apps.reconstruction.mri_utils) RootMeanSquaredError (class in monai.handlers) rot90_boxes() (in module monai.apps.detection.transforms.box_ops) Rotate (class in monai.transforms) rotate() (in module monai.transforms.spatial.functional) Rotate90 (class in monai.transforms) rotate90() (in module monai.transforms.spatial.functional) Rotate90d (class in monai.transforms) RotateBox90 (class in monai.apps.detection.transforms.array) RotateBox90d (class in monai.apps.detection.transforms.dictionary) RotateBox90D (in module monai.apps.detection.transforms.dictionary) RotateBox90Dict (in module monai.apps.detection.transforms.dictionary) Rotated (class in monai.transforms) run() (in module monai.bundle) (monai.apps.auto3dseg.AutoRunner method) (monai.apps.auto3dseg.EnsembleRunner method) (monai.apps.nnunet.nnUNetV2Runner method) (monai.engines.Evaluator method) (monai.engines.Trainer method) (monai.engines.Workflow method) (monai.utils.jupyter_utils.ThreadContainer method) run_algo() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) (monai.auto3dseg.AlgoGen method) run_cmd() (in module monai.utils.misc)

S

SABlock (class in monai.networks.blocks) SaliencyInferer (class in monai.inferers) same_padding() (in module monai.networks.layers.convutils) sample_slices() (in module monai.utils.misc) SampleOperations (class in monai.auto3dseg) save_obj() (in module monai.utils.misc) save_prob_map() (monai.handlers.probability_maps.ProbMapProducer method) save_state() (in module monai.networks.utils) SaveClassificationd (class in monai.transforms) SaveImage (class in monai.transforms) SaveImaged (class in monai.transforms) SavitzkyGolayFilter (class in monai.networks.layers) SavitzkyGolaySmooth (class in monai.transforms) SavitzkyGolaySmoothd (class in monai.transforms) scale_affine() (in module monai.transforms.utils) ScaleIntensity (class in monai.transforms) ScaleIntensityd (class in monai.transforms) ScaleIntensityFixedMean (class in monai.transforms) ScaleIntensityRange (class in monai.transforms) ScaleIntensityRanged (class in monai.transforms) ScaleIntensityRangePercentiles (class in monai.transforms) ScaleIntensityRangePercentilesd (class in monai.transforms) se_ratio (monai.networks.nets.BlockArgs attribute) searchsorted() (in module monai.transforms.utils_pytorch_numpy_unification) SEBlock (class in monai.networks.blocks) SEBottleneck (class in monai.networks.blocks) SegResNet (class in monai.networks.nets) SegResNetDS (class in monai.networks.nets) SegResNetVAE (class in monai.networks.nets) SegSummarizer (class in monai.auto3dseg) select_boxes_per_image() (monai.apps.detection.utils.box_selector.BoxSelector method) select_cross_validation_folds() (in module monai.data.utils) select_labels() (in module monai.apps.detection.transforms.box_ops) select_negatives() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSamplerBase method) select_positives() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSampler method) select_samples_img_list() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSampler method) select_samples_per_img() (monai.apps.detection.utils.hard_negative_sampler.HardNegativeSampler method) select_top_score_idx_per_level() (monai.apps.detection.utils.box_selector.BoxSelector method) select_transform_call() (in module monai.utils.profiling) SelectItemsd (class in monai.transforms) SENet (class in monai.networks.nets) SENet154 (class in monai.networks.nets) sensitivity_map_expand() (in module monai.apps.reconstruction.networks.nets.utils) sensitivity_map_reduce() (in module monai.apps.reconstruction.networks.nets.utils) separable_filtering() (in module monai.networks.layers) SEResNet101 (class in monai.networks.nets) SEResNet152 (class in monai.networks.nets) SEResNet50 (class in monai.networks.nets) SEResNetBottleneck (class in monai.networks.blocks) SEResNext101 (class in monai.networks.nets) SEResNext50 (class in monai.networks.nets) SEResNeXtBottleneck (class in monai.networks.blocks) set() (monai.bundle.ConfigParser method) set_algos() (monai.apps.auto3dseg.AlgoEnsemble method) set_analyze_params() (monai.apps.auto3dseg.AutoRunner method) set_array() (monai.data.MetaTensor method) set_atss_matcher() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_balanced_sampler() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_box_coder_weights() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_box_regression_loss() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_box_selector_parameters() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_budget() (monai.auto3dseg.AlgoGen method) set_cell_anchors() (monai.apps.detection.utils.anchor_utils.AnchorGenerator method) set_cls_loss() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_data() (monai.data.CacheDataset method) (monai.data.GridPatchDataset method) (monai.data.LMDBDataset method) (monai.data.PersistentDataset method) (monai.data.SmartCacheDataset method) set_data_array() (monai.data.ITKWriter method) (monai.data.NibabelWriter method) (monai.data.PILWriter method) set_data_source() (monai.apps.auto3dseg.BundleAlgo method) set_data_src() (monai.apps.auto3dseg.BundleGen method) set_data_stats() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.auto3dseg.BundleGen method) (monai.auto3dseg.Algo method) (monai.auto3dseg.AlgoGen method) set_determinism() (in module monai.utils.misc) set_device_info() (monai.apps.auto3dseg.AutoRunner method) set_ensemble_method() (monai.apps.auto3dseg.AlgoEnsembleBuilder method) (monai.apps.auto3dseg.AutoRunner method) (monai.apps.auto3dseg.EnsembleRunner method) set_gpu_customization() (monai.apps.auto3dseg.AutoRunner method) set_hard_negative_sampler() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_hpo_params() (monai.apps.auto3dseg.AutoRunner method) set_image_save_transform() (monai.apps.auto3dseg.AutoRunner method) (monai.apps.auto3dseg.EnsembleRunner method) set_infer_files() (monai.apps.auto3dseg.AlgoEnsemble method) set_metadata() (monai.data.ITKWriter method) (monai.data.NibabelWriter method) (monai.data.PILWriter method) set_mlflow_experiment_name() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.auto3dseg.BundleGen method) set_mlflow_tracking_uri() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.auto3dseg.BundleGen method) set_named_module() (in module monai.networks.utils) set_nni_search_space() (monai.apps.auto3dseg.AutoRunner method) set_num_fold() (monai.apps.auto3dseg.AutoRunner method) (monai.apps.auto3dseg.EnsembleRunner method) set_options() (monai.transforms.SaveImage method) set_prediction_params() (monai.apps.auto3dseg.AutoRunner method) set_random_state() (monai.apps.detection.transforms.dictionary.RandFlipBoxd method) (monai.apps.detection.transforms.dictionary.RandZoomBoxd method) (monai.transforms.Compose method) (monai.transforms.Rand2DElastic method) (monai.transforms.Rand2DElasticd method) (monai.transforms.Rand3DElastic method) (monai.transforms.Rand3DElasticd method) (monai.transforms.RandAdjustContrastd method) (monai.transforms.RandAffine method) (monai.transforms.RandAffined method) (monai.transforms.RandAxisFlipd method) (monai.transforms.RandBiasFieldd method) (monai.transforms.RandCoarseDropoutd method) (monai.transforms.RandCoarseShuffled method) (monai.transforms.RandCropByLabelClassesd method) (monai.transforms.RandCropByPosNegLabeld method) (monai.transforms.RandCropd method) (monai.transforms.RandFlipd method) (monai.transforms.RandGaussianNoised method) (monai.transforms.RandGaussianSharpend method) (monai.transforms.RandGaussianSmoothd method) (monai.transforms.RandGibbsNoised method) (monai.transforms.RandGridDistortiond method) (monai.transforms.RandGridPatchd method) (monai.transforms.RandHistogramShiftd method) (monai.transforms.RandKSpaceSpikeNoised method) (monai.transforms.Randomizable method) (monai.transforms.RandRicianNoised method) (monai.transforms.RandRotated method) (monai.transforms.RandScaleIntensityd method) (monai.transforms.RandScaleIntensityFixedMeand method) (monai.transforms.RandShiftIntensityd method) (monai.transforms.RandSimulateLowResolutiond method) (monai.transforms.RandSmoothDeform method) (monai.transforms.RandSmoothDeformd method) (monai.transforms.RandSmoothFieldAdjustContrast method) (monai.transforms.RandSmoothFieldAdjustContrastd method) (monai.transforms.RandSmoothFieldAdjustIntensity method) (monai.transforms.RandSmoothFieldAdjustIntensityd method) (monai.transforms.RandSpatialCropSamples method) (monai.transforms.RandStdShiftIntensityd method) (monai.transforms.RandWeightedCropd method) (monai.transforms.RandZoomd method)

set_regular_matcher() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_rnd() (in module monai.data.utils) set_score() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) (monai.auto3dseg.AlgoGen method) set_sliding_window_inferer() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_swish() (monai.networks.nets.EfficientNet method) set_target_keys() (monai.apps.detection.networks.retinanet_detector.RetinaNetDetector method) set_tracing() (monai.transforms.TraceableTransform method) set_track_meta() (in module monai.data.meta_obj) set_trainer() (monai.handlers.EarlyStopHandler method) set_training_params() (monai.apps.auto3dseg.AutoRunner method) set_transform_hash() (monai.data.PersistentDataset method) set_trial() (monai.apps.auto3dseg.OptunaGen method) set_validator() (monai.handlers.ValidationHandler method) shape_factor() (monai.networks.nets.SegResNetDS method) shift_fourier() (monai.transforms.utils.Fourier static method) ShiftIntensity (class in monai.transforms) ShiftIntensityd (class in monai.transforms) ShuffleBuffer (class in monai.data) shutdown() (monai.data.SmartCacheDataset method) SignalContinuousWavelet (class in monai.transforms) SignalFillEmpty (class in monai.transforms) SignalFillEmptyd (class in monai.transforms) SignalRandAddGaussianNoise (class in monai.transforms) SignalRandAddSine (class in monai.transforms) SignalRandAddSinePartial (class in monai.transforms) SignalRandAddSquarePulse (class in monai.transforms) SignalRandAddSquarePulsePartial (class in monai.transforms) SignalRandDrop (class in monai.transforms) SignalRandScale (class in monai.transforms) SignalRandShift (class in monai.transforms) SignalRemoveFrequency (class in monai.transforms) SimpleASPP (class in monai.networks.blocks) SimpleInferer (class in monai.inferers) SimulateDelay (class in monai.transforms) SimulateDelayd (class in monai.transforms) SkipConnection (class in monai.networks.layers) SkipMode (class in monai.utils.enums) SliceInferer (class in monai.inferers) sliding_window_inference() (in module monai.inferers) SlidingPatchWSIDataset (class in monai.data) SlidingWindowHoVerNetInferer (class in monai.apps.pathology.inferers) SlidingWindowInferer (class in monai.inferers) SlidingWindowInfererAdapt (class in monai.inferers) SlidingWindowSplitter (class in monai.inferers) SmartCacheDataset (class in monai.data) SmartCacheHandler (class in monai.handlers) SmoothGrad (class in monai.visualize.gradient_based) SobelGradients (class in monai.transforms) SobelGradientsd (class in monai.transforms) soft_clip() (in module monai.transforms.utils) soft_dc() (monai.apps.reconstruction.networks.blocks.varnetblock.VarNetBlock method) SoftclDiceLoss (class in monai.losses) SoftDiceclDiceLoss (class in monai.losses) softplus() (in module monai.transforms.utils_pytorch_numpy_unification) SomeOf (class in monai.transforms) sort_score() (monai.apps.auto3dseg.AlgoEnsembleBestN method) sorted_dict() (in module monai.data.utils) SpaceKeys (class in monai.utils.enums) Spacing (class in monai.transforms) Spacingd (class in monai.transforms) spatial_crop_boxes() (in module monai.data.box_utils) spatial_resample() (in module monai.transforms.spatial.functional) SpatialCrop (class in monai.transforms) SpatialCropBox (class in monai.apps.detection.transforms.array) SpatialCropd (class in monai.transforms) SpatialCropForegroundd (class in monai.apps.deepgrow.transforms) SpatialCropGuidanced (class in monai.apps.deepgrow.transforms) SpatialPad (class in monai.transforms) SpatialPadd (class in monai.transforms) SpatialResample (class in monai.transforms) SpatialResampled (class in monai.transforms) SplineMode (class in monai.utils.enums) split_args() (in module monai.networks.layers) split_id() (monai.bundle.ReferenceResolver class method) split_path_id() (monai.bundle.ConfigParser class method) SplitDim (class in monai.transforms) SplitDimd (class in monai.transforms) Splitter (class in monai.inferers) SqueezeDim (class in monai.transforms) SqueezeDimd (class in monai.transforms) SSIMLoss (class in monai.losses.ssim_loss) SSIMMetric (class in monai.metrics.regression) stack() (in module monai.transforms.utils_pytorch_numpy_unification) standardize_empty_box() (in module monai.data.box_utils) StandardizeEmptyBox (class in monai.apps.detection.transforms.array) StandardizeEmptyBoxd (class in monai.apps.detection.transforms.dictionary) StandardizeEmptyBoxD (in module monai.apps.detection.transforms.dictionary) StandardizeEmptyBoxDict (in module monai.apps.detection.transforms.dictionary) StandardMode (in module monai.data.box_utils) star_zip_with() (in module monai.utils.misc) start() (monai.data.SmartCacheDataset method) (monai.handlers.MLFlowHandler method) started() (monai.handlers.SmartCacheHandler method) StateCacher (class in monai.utils.state_cacher) StatsHandler (class in monai.handlers) status() (monai.utils.jupyter_utils.ThreadContainer method) status_dict (monai.utils.jupyter_utils.ThreadContainer property) StatusMembers (class in monai.utils.jupyter_utils) std() (in module monai.transforms.utils_pytorch_numpy_unification) StdShiftIntensity (class in monai.transforms) StdShiftIntensityd (class in monai.transforms) step() (monai.optimizers.Novograd method) stop() (monai.utils.jupyter_utils.ThreadContainer method) stopping_fn_from_loss() (in module monai.handlers.utils) stopping_fn_from_metric() (in module monai.handlers.utils) store() (monai.utils.state_cacher.StateCacher method) str2bool() (in module monai.utils.misc) str2list() (in module monai.utils.misc) StrEnum (class in monai.utils.enums) stride (monai.networks.nets.BlockArgs attribute) string_list_all_gather() (in module monai.utils.dist) SubpixelUpsample (class in monai.networks.blocks) SubpixelUpSample (in module monai.networks.blocks) Subpixelupsample (in module monai.networks.blocks) summarize() (monai.auto3dseg.SegSummarizer method) SummaryOperations (class in monai.auto3dseg) SupervisedEvaluator (class in monai.engines) SupervisedTrainer (class in monai.engines) SURELoss (class in monai.losses) SurfaceDiceMetric (class in monai.metrics) SurfaceDistance (class in monai.handlers) SurfaceDistanceMetric (class in monai.metrics) swapaxes_boxes() (in module monai.apps.detection.transforms.box_ops) SwinUNETR (class in monai.networks.nets) Swish (class in monai.networks.blocks) sync_meta_info() (in module monai.transforms.utils)

T

TciaDataset (class in monai.apps) tensor_to_images() (in module monai.utils.jupyter_utils) TensorBoardHandler (class in monai.handlers) TensorBoardImageHandler (class in monai.handlers) TensorBoardStatsHandler (class in monai.handlers) TestTimeAugmentation (class in monai.data) ThreadBuffer (class in monai.data) ThreadContainer (class in monai.utils.jupyter_utils) ThreadDataLoader (class in monai.data) ThresholdIntensity (class in monai.transforms) ThresholdIntensityd (class in monai.transforms) TiffFileWSIReader (class in monai.data) to_affine_nd() (in module monai.data.utils) to_kwargs() (in module monai.transforms.adaptors) to_norm_affine() (in module monai.networks.utils) to_string() (monai.networks.nets.BlockArgs method) to_tuple_of_dictionaries() (in module monai.utils.misc) ToCupy (class in monai.transforms) ToCupyd (class in monai.transforms) ToDevice (class in monai.transforms) ToDeviced (class in monai.transforms) ToMetaTensord (class in monai.transforms) ToNumpy (class in monai.transforms) ToNumpyd (class in monai.transforms) ToPIL (class in monai.transforms) ToPILd (class in monai.transforms) TopologyConstruction (class in monai.networks.nets) TopologyInstance (class in monai.networks.nets) TopologySearch (class in monai.networks.nets) torch_profiler_full() (in module monai.utils.profiling) torch_profiler_time_cpu_gpu() (in module monai.utils.profiling) torch_profiler_time_end_to_end() (in module monai.utils.profiling)

TorchVision (class in monai.transforms) TorchVisiond (class in monai.transforms) TorchVisionFCModel (class in monai.networks.nets) ToTensor (class in monai.transforms) ToTensord (class in monai.transforms) trace_key() (monai.transforms.TraceableTransform static method) trace_transform() (monai.transforms.TraceableTransform method) TraceableTransform (class in monai.transforms) TraceKeys (class in monai.utils.enums) TraceStatusKeys (class in monai.utils.enums) track_transform_meta() (monai.transforms.TraceableTransform class method) train() (monai.apps.auto3dseg.BundleAlgo method) (monai.apps.nnunet.nnUNetV2Runner method) (monai.auto3dseg.Algo method) (monai.fl.client.ClientAlgo method) (monai.fl.client.MonaiAlgo method) train_mode() (in module monai.networks.utils) train_parallel() (monai.apps.nnunet.nnUNetV2Runner method) train_parallel_cmd() (monai.apps.nnunet.nnUNetV2Runner method) train_single_model() (monai.apps.nnunet.nnUNetV2Runner method) TrainableBilateralFilter (class in monai.networks.layers) TrainableJointBilateralFilter (class in monai.networks.layers) Trainer (class in monai.engines) Transchex (class in monai.networks.nets) Transform (class in monai.transforms) transform_info_keys() (monai.transforms.TraceableTransform static method) TransformBackends (class in monai.utils.enums) TransformerBlock (class in monai.networks.blocks) Transpose (class in monai.transforms) Transposed (class in monai.transforms) trt_export() (in module monai.bundle) TverskyLoss (class in monai.losses)

U

UNet (class in monai.networks.nets) Unet (in module monai.networks.nets) unet (in module monai.networks.nets) UnetBasicBlock (class in monai.networks.blocks) UnetOutBlock (class in monai.networks.blocks) UNETR (class in monai.networks.nets) UnetrBasicBlock (class in monai.networks.blocks) UnetResBlock (class in monai.networks.blocks) UnetrPrUpBlock (class in monai.networks.blocks) UnetrUpBlock (class in monai.networks.blocks) UnetUpBlock (class in monai.networks.blocks) unique() (in module monai.transforms.utils_pytorch_numpy_unification) unravel_index() (in module monai.transforms.utils_pytorch_numpy_unification) unravel_indices() (in module monai.transforms.utils_pytorch_numpy_unification) unwrap_ops() (monai.auto3dseg.Analyzer static method)

update() (monai.bundle.ConfigParser method) (monai.handlers.IgniteMetricHandler method) (monai.networks.layers.ConjugateGradient method) update_cache() (monai.data.SmartCacheDataset method) update_config() (monai.bundle.ConfigItem method) update_config_with_refs() (monai.bundle.ReferenceResolver class method) update_kwargs() (in module monai.bundle) update_meta() (monai.data.MetaTensor static method) update_ops() (monai.auto3dseg.Analyzer method) update_ops_nested_label() (monai.auto3dseg.Analyzer method) update_params() (monai.apps.auto3dseg.NNIGen method) (monai.apps.auto3dseg.OptunaGen method) update_refs_pattern() (monai.bundle.ReferenceResolver class method) UpSample (class in monai.networks.blocks) Upsample (in module monai.networks.blocks) UpsampleMode (class in monai.utils.enums)

V

validate() (monai.apps.nnunet.nnUNetV2Runner method) validate_single_model() (monai.apps.nnunet.nnUNetV2Runner method) ValidationHandler (class in monai.handlers) VanillaGrad (class in monai.visualize.gradient_based) VarAutoEncoder (class in monai.networks.nets) VarFullyConnectedNet (class in monai.networks.nets) VarianceMetric (class in monai.metrics) VariationalNetworkModel (class in monai.apps.reconstruction.networks.nets.varnet) VarNetBlock (class in monai.apps.reconstruction.networks.blocks.varnetblock) verify_metadata() (in module monai.bundle) verify_net_in_out() (in module monai.bundle) verify_report_format() (in module monai.auto3dseg) verify_suffix() (monai.apps.reconstruction.fastmri_reader.FastMRIReader method) (monai.data.BaseWSIReader method) (monai.data.ImageReader method) (monai.data.ITKReader method) (monai.data.NibabelReader method) (monai.data.NrrdReader method) (monai.data.NumpyReader method) (monai.data.PILReader method)

version_geq() (in module monai.utils.module) version_leq() (in module monai.utils.module) VideoDataset (class in monai.data.video_dataset) VideoFileDataset (class in monai.data.video_dataset) ViT (class in monai.networks.nets) ViTAutoEnc (class in monai.networks.nets) VNet (class in monai.networks.nets) VoteEnsemble (class in monai.transforms) VoteEnsembled (class in monai.transforms) VoxelMorph (class in monai.networks.nets) voxelmorph (in module monai.networks.nets) VoxelMorphUNet (class in monai.networks.nets) voxelmorphunet (in module monai.networks.nets)

W

WarmupCosineSchedule (class in monai.optimizers) Warp (class in monai.networks.blocks) wasserstein_distance_map() (monai.losses.GeneralizedWassersteinDiceLoss method) Watershed (class in monai.apps.pathology.transforms.post.array) Watershedd (class in monai.apps.pathology.transforms.post.dictionary) Weight (class in monai.utils.enums) weighted_patch_samples() (in module monai.transforms.utils) where() (in module monai.transforms.utils_pytorch_numpy_unification) worker_init_fn() (in module monai.data.utils)

Workflow (class in monai.engines) WorkflowProfiler (class in monai.utils.profiling) write() (monai.data.ImageWriter method) (monai.data.ITKWriter method) (monai.data.NibabelWriter method) (monai.data.PILWriter method) write_metrics_reports() (in module monai.handlers.utils) WSIReader (class in monai.data) WSISlidingWindowSplitter (class in monai.inferers)

Z

ZarrAvgMerger (class in monai.inferers) zero_margins() (in module monai.transforms.utils) zip_with() (in module monai.utils.misc) ZipDataset (class in monai.data) Zoom (class in monai.transforms) zoom() (in module monai.transforms.spatial.functional)

zoom_affine() (in module monai.data.utils) zoom_boxes() (in module monai.apps.detection.transforms.box_ops) ZoomBox (class in monai.apps.detection.transforms.array) ZoomBoxd (class in monai.apps.detection.transforms.dictionary) ZoomBoxD (in module monai.apps.detection.transforms.dictionary) ZoomBoxDict (in module monai.apps.detection.transforms.dictionary) Zoomd (class in monai.transforms)