0.5.1
Feature highlights
What’s new in 0.5.0 🎉
Modules overview
APIs
Applications
Transforms
Loss functions
Network architectures
Metrics
Optimizers
Data
Engines
Inference methods
Event handlers
Visualizations
Utilities
Installation
Installation guide
MONAI
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E
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F
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__call__() (monai.inferers.Inferer method)
(monai.inferers.SaliencyInferer method)
(monai.inferers.SimpleInferer method)
(monai.inferers.SlidingWindowInferer method)
(monai.transforms.Activations method)
(monai.transforms.Activationsd method)
(monai.transforms.AddChannel method)
(monai.transforms.AddChanneld method)
(monai.transforms.AddExtremePointsChannel method)
(monai.transforms.AddExtremePointsChanneld method)
(monai.transforms.AdjustContrast method)
(monai.transforms.AdjustContrastd method)
(monai.transforms.Affine method)
(monai.transforms.Affined method)
(monai.transforms.AffineGrid method)
(monai.transforms.AsChannelFirst method)
(monai.transforms.AsChannelFirstd method)
(monai.transforms.AsChannelLast method)
(monai.transforms.AsChannelLastd method)
(monai.transforms.AsDiscrete method)
(monai.transforms.AsDiscreted method)
(monai.transforms.BorderPad method)
(monai.transforms.BorderPadd method)
(monai.transforms.BoundingRect method)
(monai.transforms.BoundingRectd method)
(monai.transforms.CastToType method)
(monai.transforms.CastToTyped method)
(monai.transforms.CenterSpatialCrop method)
(monai.transforms.CenterSpatialCropd method)
(monai.transforms.Compose method)
(monai.transforms.ConcatItemsd method)
(monai.transforms.ConvertToMultiChannelBasedOnBratsClasses method)
(monai.transforms.ConvertToMultiChannelBasedOnBratsClassesd method)
(monai.transforms.CopyItemsd method)
(monai.transforms.CropForeground method)
(monai.transforms.CropForegroundd method)
(monai.transforms.DataStats method)
(monai.transforms.DataStatsd method)
(monai.transforms.DeleteItemsd method)
(monai.transforms.DetectEnvelope method)
(monai.transforms.DivisiblePad method)
(monai.transforms.DivisiblePadd method)
(monai.transforms.Ensembled method)
(monai.transforms.EnsureChannelFirst method)
(monai.transforms.EnsureChannelFirstd method)
(monai.transforms.FgBgToIndices method)
(monai.transforms.FgBgToIndicesd method)
(monai.transforms.Flip method)
(monai.transforms.Flipd method)
(monai.transforms.GaussianSharpen method)
(monai.transforms.GaussianSharpend method)
(monai.transforms.GaussianSmooth method)
(monai.transforms.GaussianSmoothd method)
(monai.transforms.Identity method)
(monai.transforms.Identityd method)
(monai.transforms.KeepLargestConnectedComponent method)
(monai.transforms.KeepLargestConnectedComponentd method)
(monai.transforms.LabelToContour method)
(monai.transforms.LabelToContourd method)
(monai.transforms.LabelToMask method)
(monai.transforms.LabelToMaskd method)
(monai.transforms.Lambda method)
(monai.transforms.Lambdad method)
(monai.transforms.LoadImage method)
(monai.transforms.LoadImaged method)
(monai.transforms.MapLabelValue method)
(monai.transforms.MapLabelValued method)
(monai.transforms.MapTransform method)
(monai.transforms.MaskIntensity method)
(monai.transforms.MaskIntensityd method)
(monai.transforms.MeanEnsemble method)
(monai.transforms.NormalizeIntensity method)
(monai.transforms.NormalizeIntensityd method)
(monai.transforms.Orientation method)
(monai.transforms.Orientationd method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAdjustContrast method)
(monai.transforms.RandAdjustContrastd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.RandAffineGrid method)
(monai.transforms.RandAxisFlip method)
(monai.transforms.RandAxisFlipd method)
(monai.transforms.RandBiasField method)
(monai.transforms.RandBiasFieldd method)
(monai.transforms.RandCropByPosNegLabel method)
(monai.transforms.RandCropByPosNegLabeld method)
(monai.transforms.RandDeformGrid method)
(monai.transforms.RandFlip method)
(monai.transforms.RandFlipd method)
(monai.transforms.RandGaussianNoise method)
(monai.transforms.RandGaussianNoised method)
(monai.transforms.RandGaussianSharpen method)
(monai.transforms.RandGaussianSharpend method)
(monai.transforms.RandGaussianSmooth method)
(monai.transforms.RandGaussianSmoothd method)
(monai.transforms.RandHistogramShift method)
(monai.transforms.RandHistogramShiftd method)
(monai.transforms.RandRotate method)
(monai.transforms.RandRotate90 method)
(monai.transforms.RandRotate90d method)
(monai.transforms.RandRotated method)
(monai.transforms.RandScaleIntensity method)
(monai.transforms.RandScaleIntensityd method)
(monai.transforms.RandShiftIntensity method)
(monai.transforms.RandShiftIntensityd method)
(monai.transforms.RandSpatialCrop method)
(monai.transforms.RandSpatialCropd method)
(monai.transforms.RandSpatialCropSamples method)
(monai.transforms.RandSpatialCropSamplesd method)
(monai.transforms.RandStdShiftIntensity method)
(monai.transforms.RandStdShiftIntensityd method)
(monai.transforms.RandTorchVisiond method)
(monai.transforms.RandWeightedCrop method)
(monai.transforms.RandWeightedCropd method)
(monai.transforms.RandZoom method)
(monai.transforms.RandZoomd method)
(monai.transforms.RepeatChannel method)
(monai.transforms.RepeatChanneld method)
(monai.transforms.Resample method)
(monai.transforms.Resize method)
(monai.transforms.Resized method)
(monai.transforms.ResizeWithPadOrCrop method)
(monai.transforms.ResizeWithPadOrCropd method)
(monai.transforms.Rotate method)
(monai.transforms.Rotate90 method)
(monai.transforms.Rotate90d method)
(monai.transforms.Rotated method)
(monai.transforms.SaveImage method)
(monai.transforms.SaveImaged method)
(monai.transforms.SavitzkyGolaySmooth method)
(monai.transforms.ScaleIntensity method)
(monai.transforms.ScaleIntensityd method)
(monai.transforms.ScaleIntensityRange method)
(monai.transforms.ScaleIntensityRanged method)
(monai.transforms.ScaleIntensityRangePercentiles method)
(monai.transforms.ScaleIntensityRangePercentilesd method)
(monai.transforms.SelectItemsd method)
(monai.transforms.ShiftIntensity method)
(monai.transforms.ShiftIntensityd method)
(monai.transforms.SimulateDelay method)
(monai.transforms.SimulateDelayd method)
(monai.transforms.Spacing method)
(monai.transforms.Spacingd method)
(monai.transforms.SpatialCrop method)
(monai.transforms.SpatialCropd method)
(monai.transforms.SpatialPad method)
(monai.transforms.SpatialPadd method)
(monai.transforms.SplitChannel method)
(monai.transforms.SplitChanneld method)
(monai.transforms.SqueezeDim method)
(monai.transforms.SqueezeDimd method)
(monai.transforms.StdShiftIntensity method)
(monai.transforms.StdShiftIntensityd method)
(monai.transforms.ThresholdIntensity method)
(monai.transforms.ThresholdIntensityd method)
(monai.transforms.ToNumpy method)
(monai.transforms.ToNumpyd method)
(monai.transforms.TorchVision method)
(monai.transforms.TorchVisiond method)
(monai.transforms.ToTensor method)
(monai.transforms.ToTensord method)
(monai.transforms.Transform method)
(monai.transforms.Transpose method)
(monai.transforms.VoteEnsemble method)
(monai.transforms.Zoom method)
(monai.transforms.Zoomd method)
__getitem__() (monai.data.Dataset method)
A
Activations (class in monai.transforms)
Activationsd (class in monai.transforms)
adaptor() (in module monai.transforms.adaptors)
add_animated_gif() (in module monai.visualize.img2tensorboard)
add_animated_gif_no_channels() (in module monai.visualize.img2tensorboard)
add_factory_callable() (monai.networks.layers.LayerFactory method)
AddChannel (class in monai.transforms)
AddChanneld (class in monai.transforms)
AddExtremePointsChannel (class in monai.transforms)
AddExtremePointsChanneld (class in monai.transforms)
AddGuidanceFromPointsd (class in monai.apps.deepgrow.transforms)
AddGuidanceSignald (class in monai.apps.deepgrow.transforms)
AddInitialSeedPointd (class in monai.apps.deepgrow.transforms)
AddRandomGuidanced (class in monai.apps.deepgrow.transforms)
AdjustContrast (class in monai.transforms)
AdjustContrastd (class in monai.transforms)
ADN (class in monai.networks.blocks)
Affine (class in monai.transforms)
Affined (class in monai.transforms)
AffineGrid (class in monai.transforms)
AffineTransform (class in monai.networks.layers)
AHNet (class in monai.networks.nets)
alias() (in module monai.utils.aliases)
allow_missing_keys_mode() (in module monai.transforms.utils)
apply_alias() (in module monai.transforms.adaptors)
ArrayDataset (class in monai.data)
AsChannelFirst (class in monai.transforms)
AsChannelFirstd (class in monai.transforms)
AsChannelLast (class in monai.transforms)
AsChannelLastd (class in monai.transforms)
AsDiscrete (class in monai.transforms)
AsDiscreted (class in monai.transforms)
attach() (monai.apps.pathology.handlers.ProbMapProducer method)
(monai.handlers.CheckpointLoader method)
(monai.handlers.CheckpointSaver method)
(monai.handlers.ClassificationSaver method)
(monai.handlers.EarlyStopHandler method)
(monai.handlers.IterationMetric method)
(monai.handlers.LrScheduleHandler method)
(monai.handlers.MetricLogger method)
(monai.handlers.MetricsSaver method)
(monai.handlers.ParamSchedulerHandler method)
(monai.handlers.SegmentationSaver method)
(monai.handlers.SmartCacheHandler method)
(monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardImageHandler method)
(monai.handlers.TensorBoardStatsHandler method)
(monai.handlers.TransformInverter method)
(monai.handlers.ValidationHandler method)
attach_evaluator() (monai.handlers.MetricLogger method)
AutoEncoder (class in monai.networks.nets)
B
backward() (monai.networks.layers.BilateralFilter static method)
BasicUNet (class in monai.networks.nets)
BasicUnet (in module monai.networks.nets)
Basicunet (in module monai.networks.nets)
BatchInverseTransform (class in monai.data)
BendingEnergyLoss (class in monai.losses)
BilateralFilter (class in monai.networks.layers)
BorderPad (class in monai.transforms)
BorderPadd (class in monai.transforms)
BoundingRect (class in monai.transforms)
BoundingRectd (class in monai.transforms)
C
CacheDataset (class in monai.data)
CacheNTransDataset (class in monai.data)
calculate_out_shape() (in module monai.networks.layers.convutils)
CAM (class in monai.visualize.class_activation_maps)
CastToType (class in monai.transforms)
CastToTyped (class in monai.transforms)
CenterSpatialCrop (class in monai.transforms)
CenterSpatialCropd (class in monai.transforms)
ChannelPad (class in monai.networks.layers)
ChannelSELayer (class in monai.networks.blocks)
check_hash() (in module monai.apps)
check_transforms_match() (monai.transforms.InvertibleTransform method)
CheckpointLoader (class in monai.handlers)
CheckpointSaver (class in monai.handlers)
ClassificationSaver (class in monai.handlers)
Classifier (class in monai.networks.nets)
close() (monai.handlers.TensorBoardHandler method)
completed() (monai.handlers.CheckpointSaver method)
(monai.handlers.SmartCacheHandler method)
Compose (class in monai.transforms)
compute() (monai.handlers.IterationMetric method)
(monai.handlers.ROCAUC method)
compute_average_surface_distance() (in module monai.metrics)
compute_bounding_box() (monai.transforms.CropForeground method)
compute_fp_tp() (monai.apps.pathology.metrics.LesionFROC method)
compute_froc_score() (in module monai.metrics)
compute_hausdorff_distance() (in module monai.metrics)
compute_importance_map() (in module monai.data.utils)
compute_isolated_tumor_cells() (in module monai.apps.pathology.utils)
compute_map() (monai.visualize.class_activation_maps.CAM method)
(monai.visualize.class_activation_maps.GradCAM method)
(monai.visualize.class_activation_maps.GradCAMpp method)
compute_meandice() (in module monai.metrics)
compute_multi_instance_mask() (in module monai.apps.pathology.utils)
compute_roc_auc() (in module monai.metrics)
compute_shape_offset() (in module monai.data.utils)
ConcatItemsd (class in monai.transforms)
ConfusionMatrix (class in monai.handlers)
ConfusionMatrixMetric (class in monai.metrics)
convert_inverse_interp_mode() (in module monai.transforms.utils)
convert_to_rgb_array() (monai.data.WSIReader method)
ConvertToMultiChannelBasedOnBratsClasses (class in monai.transforms)
ConvertToMultiChannelBasedOnBratsClassesd (class in monai.transforms)
Convolution (class in monai.networks.blocks)
copy_to_device() (in module monai.utils.misc)
CopyItemsd (class in monai.transforms)
copypaste_arrays() (in module monai.transforms.utils)
correct_nifti_header_if_necessary() (in module monai.data.utils)
create_control_grid() (in module monai.transforms.utils)
create_dataset() (in module monai.apps.deepgrow.dataset)
create_file_basename() (in module monai.data.utils)
create_grid() (in module monai.transforms.utils)
create_multigpu_supervised_evaluator() (in module monai.engines.multi_gpu_supervised_trainer)
create_multigpu_supervised_trainer() (in module monai.engines.multi_gpu_supervised_trainer)
create_rotate() (in module monai.transforms.utils)
create_scale() (in module monai.transforms.utils)
create_shear() (in module monai.transforms.utils)
create_test_image_2d() (in module monai.data.synthetic)
create_test_image_3d() (in module monai.data.synthetic)
create_translate() (in module monai.transforms.utils)
CRF (class in monai.networks.blocks)
Critic (class in monai.networks.nets)
crop_pad() (monai.transforms.CropForeground method)
CropForeground (class in monai.transforms)
CropForegroundd (class in monai.transforms)
CrossValidation (class in monai.apps)
D
DataLoader (class in monai.data)
Dataset (class in monai.data)
DataStats (class in monai.transforms)
DataStatsd (class in monai.transforms)
DecathlonDataset (class in monai.apps)
decollate_batch() (in module monai.data.utils)
default_normalizer() (in module monai.visualize.class_activation_maps)
DeleteItemsd (class in monai.transforms)
dense_patch_slices() (in module monai.data.utils)
DenseNet (class in monai.networks.nets)
DetectEnvelope (class in monai.transforms)
Dice (in module monai.losses)
dice (in module monai.losses)
DiceCELoss (class in monai.losses)
DiceFocalLoss (class in monai.losses)
DiceLoss (class in monai.losses)
DiceMetric (class in monai.metrics)
Discriminator (class in monai.networks.nets)
DistributedSampler (class in monai.data)
DistributedWeightedRandomSampler (class in monai.data)
DivisiblePad (class in monai.transforms)
DivisiblePadd (class in monai.transforms)
download_and_extract() (in module monai.apps)
download_url() (in module monai.apps)
dtype_numpy_to_torch() (in module monai.utils.misc)
dtype_torch_to_numpy() (in module monai.utils.misc)
DVF2DDF (class in monai.networks.blocks)
DynUNet (class in monai.networks.nets)
DynUnet (in module monai.networks.nets)
Dynunet (in module monai.networks.nets)
E
EarlyStopHandler (class in monai.handlers)
EfficientNet (class in monai.networks.nets)
Ensembled (class in monai.transforms)
EnsembleEvaluator (class in monai.engines)
ensure_tuple() (in module monai.utils.misc)
ensure_tuple_rep() (in module monai.utils.misc)
ensure_tuple_size() (in module monai.utils.misc)
EnsureChannelFirst (class in monai.transforms)
EnsureChannelFirstd (class in monai.transforms)
epoch_completed() (monai.handlers.SmartCacheHandler method)
(monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardStatsHandler method)
eval_mode() (in module monai.networks.utils)
evaluate() (monai.apps.pathology.metrics.LesionFROC method)
Evaluator (class in monai.engines)
exact_version() (in module monai.utils.module)
exception_raised() (monai.handlers.CheckpointSaver method)
(monai.handlers.StatsHandler method)
export() (in module monai.utils.module)
extractall() (in module monai.apps)
extreme_points_to_image() (in module monai.transforms.utils)
F
factory_function() (monai.networks.layers.LayerFactory method)
fall_back_tuple() (in module monai.utils.misc)
FCN (class in monai.networks.blocks)
Fetch2DSliced (class in monai.apps.deepgrow.transforms)
FgBgToIndices (class in monai.transforms)
FgBgToIndicesd (class in monai.transforms)
FindAllValidSlicesd (class in monai.apps.deepgrow.transforms)
FindDiscrepancyRegionsd (class in monai.apps.deepgrow.transforms)
first() (in module monai.utils.misc)
Flatten (class in monai.networks.layers)
flatten() (monai.transforms.Compose method)
Flip (class in monai.transforms)
Flipd (class in monai.transforms)
FocalLoss (class in monai.losses)
forward() (monai.losses.BendingEnergyLoss method)
(monai.losses.DiceCELoss method)
(monai.losses.DiceFocalLoss method)
(monai.losses.DiceLoss method)
(monai.losses.FocalLoss method)
(monai.losses.GeneralizedDiceLoss method)
(monai.losses.GeneralizedWassersteinDiceLoss method)
(monai.losses.GlobalMutualInformationLoss method)
(monai.losses.LocalNormalizedCrossCorrelationLoss method)
(monai.losses.MaskedDiceLoss method)
(monai.losses.MultiScaleLoss method)
(monai.losses.TverskyLoss method)
(monai.networks.blocks.ChannelSELayer method)
(monai.networks.blocks.CRF method)
(monai.networks.blocks.DVF2DDF method)
(monai.networks.blocks.FCN method)
(monai.networks.blocks.GCN method)
(monai.networks.blocks.LocalNetDownSampleBlock method)
(monai.networks.blocks.LocalNetFeatureExtractorBlock method)
(monai.networks.blocks.LocalNetUpSampleBlock method)
(monai.networks.blocks.MaxAvgPool method)
(monai.networks.blocks.MCFCN method)
(monai.networks.blocks.MemoryEfficientSwish method)
(monai.networks.blocks.Mish method)
(monai.networks.blocks.Refine method)
(monai.networks.blocks.RegistrationDownSampleBlock method)
(monai.networks.blocks.RegistrationExtractionBlock method)
(monai.networks.blocks.RegistrationResidualConvBlock method)
(monai.networks.blocks.ResBlock method)
(monai.networks.blocks.ResidualUnit method)
(monai.networks.blocks.SEBlock method)
(monai.networks.blocks.SimpleASPP method)
(monai.networks.blocks.SubpixelUpsample method)
(monai.networks.blocks.Swish method)
(monai.networks.blocks.UnetBasicBlock method)
(monai.networks.blocks.UnetResBlock method)
(monai.networks.blocks.UnetUpBlock method)
(monai.networks.blocks.Warp method)
(monai.networks.layers.AffineTransform method)
(monai.networks.layers.BilateralFilter static method)
(monai.networks.layers.ChannelPad method)
(monai.networks.layers.Flatten method)
(monai.networks.layers.GaussianFilter method)
(monai.networks.layers.HilbertTransform method)
(monai.networks.layers.LLTM method)
(monai.networks.layers.SavitzkyGolayFilter method)
(monai.networks.layers.SkipConnection method)
(monai.networks.nets.AHNet method)
(monai.networks.nets.AutoEncoder method)
(monai.networks.nets.BasicUNet method)
(monai.networks.nets.Critic method)
(monai.networks.nets.DenseNet method)
(monai.networks.nets.DynUNet method)
(monai.networks.nets.EfficientNet method)
(monai.networks.nets.Generator method)
(monai.networks.nets.HighResBlock method)
(monai.networks.nets.HighResNet method)
(monai.networks.nets.Regressor method)
(monai.networks.nets.RegUNet method)
(monai.networks.nets.SegResNet method)
(monai.networks.nets.SegResNetVAE method)
(monai.networks.nets.SENet method)
(monai.networks.nets.TorchVisionFullyConvModel method)
(monai.networks.nets.UNet method)
(monai.networks.nets.VarAutoEncoder method)
(monai.networks.nets.VNet method)
FullyConnectedNet (class in monai.networks.nets)
G
GanTrainer (class in monai.engines)
GarbageCollector (class in monai.handlers)
gaussian_1d() (in module monai.networks.layers.convutils)
GaussianFilter (class in monai.networks.layers)
GaussianSharpen (class in monai.transforms)
GaussianSharpend (class in monai.transforms)
GaussianSmooth (class in monai.transforms)
GaussianSmoothd (class in monai.transforms)
GCN (class in monai.networks.blocks)
generalized_dice (in module monai.losses)
generalized_wasserstein_dice (in module monai.losses)
GeneralizedDiceLoss (class in monai.losses)
GeneralizedWassersteinDiceLoss (class in monai.losses)
generate_param_groups() (in module monai.optimizers)
generate_pos_neg_label_crop_centers() (in module monai.transforms.utils)
generate_spatial_bounding_box() (in module monai.transforms.utils)
Generator (class in monai.networks.nets)
get_confusion_matrix() (in module monai.metrics)
get_constructor() (monai.networks.layers.LayerFactory method)
get_data() (monai.data.ITKReader method)
(monai.data.NibabelReader method)
(monai.data.NumpyReader method)
(monai.data.PILReader method)
(monai.data.WSIReader method)
get_dataset() (monai.apps.CrossValidation method)
get_extreme_points() (in module monai.transforms.utils)
get_indices() (monai.apps.DecathlonDataset method)
get_largest_connected_component_mask() (in module monai.transforms.utils)
get_layer() (monai.visualize.class_activation_maps.ModelWithHooks method)
get_most_recent_transform() (monai.transforms.InvertibleTransform method)
get_num_classes() (monai.apps.MedNISTDataset method)
get_package_version() (in module monai.utils.module)
get_properties() (monai.apps.DecathlonDataset method)
get_random_patch() (in module monai.data.utils)
get_rotation_matrix() (monai.transforms.Rotate method)
get_system_info() (in module monai.config.deviceconfig)
get_torch_version_tuple() (in module monai.utils.module)
get_transformation_matrix() (monai.transforms.RandAffineGrid method)
get_valid_patch_size() (in module monai.data.utils)
GlobalMutualInformationLoss (class in monai.losses)
GlobalNet (class in monai.networks.nets)
GradCAM (class in monai.visualize.class_activation_maps)
GradCAMpp (class in monai.visualize.class_activation_maps)
grid_count() (in module monai.networks.layers)
grid_grad() (in module monai.networks.layers)
grid_pull() (in module monai.networks.layers)
grid_push() (in module monai.networks.layers)
GridPatchDataset (class in monai.data)
H
has_option() (in module monai.utils.module)
HausdorffDistance (class in monai.handlers)
HausdorffDistanceMetric (class in monai.metrics)
HighResBlock (class in monai.networks.nets)
HighResNet (class in monai.networks.nets)
HilbertTransform (class in monai.networks.layers)
I
icnr_init() (in module monai.networks.utils)
Identity (class in monai.transforms)
Identityd (class in monai.transforms)
ImageDataset (class in monai.data)
ImageMetaKey (class in monai.utils.misc)
img_bounds() (in module monai.transforms.utils)
in_bounds() (in module monai.transforms.utils)
Inferer (class in monai.inferers)
info() (monai.data.LMDBDataset method)
Interaction (class in monai.apps.deepgrow.interaction)
interval_completed() (monai.handlers.CheckpointSaver method)
InvalidPyTorchVersionError
inverse() (monai.transforms.Affined method)
(monai.transforms.BorderPadd method)
(monai.transforms.CenterSpatialCropd method)
(monai.transforms.Compose method)
(monai.transforms.CropForegroundd method)
(monai.transforms.DivisiblePadd method)
(monai.transforms.Flipd method)
(monai.transforms.InvertibleTransform method)
(monai.transforms.Orientationd method)
(monai.transforms.RandAffined method)
(monai.transforms.RandAxisFlipd method)
(monai.transforms.RandFlipd method)
(monai.transforms.RandRotate90d method)
(monai.transforms.RandRotated method)
(monai.transforms.RandSpatialCropd method)
(monai.transforms.RandZoomd method)
(monai.transforms.Resized method)
(monai.transforms.ResizeWithPadOrCropd method)
(monai.transforms.Rotate90d method)
(monai.transforms.Rotated method)
(monai.transforms.Spacingd method)
(monai.transforms.SpatialCropd method)
(monai.transforms.SpatialPadd method)
(monai.transforms.ToTensord method)
(monai.transforms.Zoomd method)
InvertibleTransform (class in monai.transforms)
is_empty() (in module monai.transforms.utils)
is_started() (monai.data.SmartCacheDataset method)
is_supported_format() (in module monai.data.utils)
issequenceiterable() (in module monai.utils.misc)
iter_patch() (in module monai.data.utils)
iter_patch_slices() (in module monai.data.utils)
IterableDataset (class in monai.data)
iteration_completed() (monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardStatsHandler method)
IterationMetric (class in monai.handlers)
ITKReader (class in monai.data)
J
json_hashing() (in module monai.data.utils)
K
KeepLargestConnectedComponent (class in monai.transforms)
KeepLargestConnectedComponentd (class in monai.transforms)
key_iterator() (monai.transforms.MapTransform method)
L
LabelToContour (class in monai.transforms)
LabelToContourd (class in monai.transforms)
LabelToMask (class in monai.transforms)
LabelToMaskd (class in monai.transforms)
Lambda (class in monai.transforms)
Lambdad (class in monai.transforms)
LayerFactory (class in monai.networks.layers)
LesionFROC (class in monai.apps.pathology.metrics)
list_data_collate() (in module monai.data.utils)
list_to_dict() (in module monai.utils.misc)
LLTM (class in monai.networks.layers)
LMDBDataset (class in monai.data)
load_decathlon_datalist() (in module monai.data)
load_state_dict() (monai.handlers.CheckpointSaver method)
load_submodules() (in module monai.utils.module)
LoadImage (class in monai.transforms)
LoadImaged (class in monai.transforms)
LocalNet (class in monai.networks.nets)
LocalNetDownSampleBlock (class in monai.networks.blocks)
LocalNetFeatureExtractorBlock (class in monai.networks.blocks)
LocalNetUpSampleBlock (class in monai.networks.blocks)
LocalNormalizedCrossCorrelationLoss (class in monai.losses)
log_metrics() (monai.handlers.MetricLogger method)
LrScheduleHandler (class in monai.handlers)
M
make_animated_gif_summary() (in module monai.visualize.img2tensorboard)
manage_replacement() (monai.data.SmartCacheDataset method)
map_binary_to_indices() (in module monai.transforms.utils)
map_spatial_axes() (in module monai.transforms.utils)
MapLabelValue (class in monai.transforms)
MapLabelValued (class in monai.transforms)
MapTransform (class in monai.transforms)
MaskedDiceLoss (class in monai.losses)
MaskedInferenceWSIDataset (class in monai.apps.pathology.datasets)
MaskIntensity (class in monai.transforms)
MaskIntensityd (class in monai.transforms)
MaxAvgPool (class in monai.networks.blocks)
MCFCN (class in monai.networks.blocks)
MeanDice (class in monai.handlers)
MeanEnsemble (class in monai.transforms)
MeanEnsembled (class in monai.transforms)
MedNISTDataset (class in monai.apps)
MemoryEfficientSwish (class in monai.networks.blocks)
MetricLogger (class in monai.handlers)
metrics_completed() (monai.handlers.CheckpointSaver method)
MetricsSaver (class in monai.handlers)
min_version() (in module monai.utils.module)
Mish (class in monai.networks.blocks)
ModelWithHooks (class in monai.visualize.class_activation_maps)
module
monai
monai.apps.deepgrow.dataset
monai.apps.deepgrow.interaction
monai.apps.deepgrow.transforms
monai.apps.pathology.datasets
monai.apps.pathology.handlers
monai.apps.pathology.metrics
monai.apps.pathology.utils
monai.config.deviceconfig
monai.data.synthetic
monai.data.utils
monai.engines.multi_gpu_supervised_trainer
monai.engines.workflow
monai.losses
monai.networks.blocks
monai.networks.layers.Act
monai.networks.layers.Conv
monai.networks.layers.convutils
monai.networks.layers.Dropout
monai.networks.layers.factories
monai.networks.layers.Norm
monai.networks.layers.Pool
monai.networks.utils
monai.transforms
monai.transforms.adaptors
monai.transforms.utils
monai.utils.aliases
monai.utils.misc
monai.utils.module
monai.utils.profiling
monai.visualize.class_activation_maps
monai.visualize.img2tensorboard
monai.visualize.occlusion_sensitivity
monai
module
monai.apps.deepgrow.dataset
module
monai.apps.deepgrow.interaction
module
monai.apps.deepgrow.transforms
module
monai.apps.pathology.datasets
module
monai.apps.pathology.handlers
module
monai.apps.pathology.metrics
module
monai.apps.pathology.utils
module
monai.config.deviceconfig
module
monai.data.synthetic
module
monai.data.utils
module
monai.engines.multi_gpu_supervised_trainer
module
monai.engines.workflow
module
monai.losses
module
monai.networks.blocks
module
monai.networks.layers.Act
module
monai.networks.layers.Conv
module
monai.networks.layers.convutils
module
monai.networks.layers.Dropout
module
monai.networks.layers.factories
module
monai.networks.layers.Norm
module
monai.networks.layers.Pool
module
monai.networks.utils
module
monai.transforms
module
monai.transforms.adaptors
module
monai.transforms.utils
module
monai.utils.aliases
module
monai.utils.misc
module
monai.utils.module
module
monai.utils.profiling
module
monai.visualize.class_activation_maps
module
monai.visualize.img2tensorboard
module
monai.visualize.occlusion_sensitivity
module
MultiScaleLoss (class in monai.losses)
N
names() (monai.networks.layers.LayerFactory property)
NibabelReader (class in monai.data)
NiftiSaver (class in monai.data)
no_collation() (in module monai.data.utils)
normal_init() (in module monai.networks.utils)
normalize_transform() (in module monai.networks.utils)
NormalizeIntensity (class in monai.transforms)
NormalizeIntensityd (class in monai.transforms)
Novograd (class in monai.optimizers)
NPZDictItemDataset (class in monai.data)
NumpyReader (class in monai.data)
O
OcclusionSensitivity (class in monai.visualize.occlusion_sensitivity)
one_hot() (in module monai.networks.utils)
optional_import() (in module monai.utils.module)
OptionalImportError
Orientation (class in monai.transforms)
Orientationd (class in monai.transforms)
P
pad_list_data_collate() (in module monai.data.utils)
ParamSchedulerHandler (class in monai.handlers)
partition_dataset() (in module monai.data)
(in module monai.data.utils)
partition_dataset_classes() (in module monai.data)
(in module monai.data.utils)
parzen_windowing() (monai.losses.GlobalMutualInformationLoss method)
PatchDataset (class in monai.data)
PatchIter (class in monai.data)
PatchWSIDataset (class in monai.apps.pathology.datasets)
PathologyProbNMS (class in monai.apps.pathology.utils)
PerfContext (class in monai.utils.profiling)
PersistentDataset (class in monai.data)
PHLFilter (class in monai.networks.layers)
pickle_hashing() (in module monai.data.utils)
PILReader (class in monai.data)
pixelshuffle() (in module monai.networks.utils)
plot_2d_or_3d_image() (in module monai.visualize.img2tensorboard)
PNGSaver (class in monai.data)
polyval() (in module monai.networks.layers.convutils)
pop_transform() (monai.transforms.InvertibleTransform method)
predict_segmentation() (in module monai.networks.utils)
prepare_ground_truth() (monai.apps.pathology.metrics.LesionFROC method)
prepare_inference_result() (monai.apps.pathology.metrics.LesionFROC method)
print_config() (in module monai.config.deviceconfig)
print_debug_info() (in module monai.config.deviceconfig)
print_gpu_info() (in module monai.config.deviceconfig)
print_system_info() (in module monai.config.deviceconfig)
ProbMapProducer (class in monai.apps.pathology.handlers)
ProbNMS (class in monai.transforms)
progress_bar() (in module monai.utils.misc)
push_transform() (monai.transforms.InvertibleTransform method)
R
Rand2DElastic (class in monai.transforms)
Rand2DElasticd (class in monai.transforms)
Rand3DElastic (class in monai.transforms)
Rand3DElasticd (class in monai.transforms)
rand_choice() (in module monai.transforms.utils)
RandAdjustContrast (class in monai.transforms)
RandAdjustContrastd (class in monai.transforms)
RandAffine (class in monai.transforms)
RandAffined (class in monai.transforms)
RandAffineGrid (class in monai.transforms)
RandAxisFlip (class in monai.transforms)
RandAxisFlipd (class in monai.transforms)
RandBiasField (class in monai.transforms)
RandBiasFieldd (class in monai.transforms)
RandCropByPosNegLabel (class in monai.transforms)
RandCropByPosNegLabeld (class in monai.transforms)
RandDeformGrid (class in monai.transforms)
RandFlip (class in monai.transforms)
RandFlipd (class in monai.transforms)
RandGaussianNoise (class in monai.transforms)
RandGaussianNoised (class in monai.transforms)
RandGaussianSharpen (class in monai.transforms)
RandGaussianSharpend (class in monai.transforms)
RandGaussianSmooth (class in monai.transforms)
RandGaussianSmoothd (class in monai.transforms)
RandHistogramShift (class in monai.transforms)
RandHistogramShiftd (class in monai.transforms)
RandLambdad (class in monai.transforms)
Randomizable (class in monai.transforms)
RandomizableTransform (class in monai.transforms)
randomize() (monai.apps.DecathlonDataset method)
(monai.apps.deepgrow.transforms.AddInitialSeedPointd method)
(monai.apps.deepgrow.transforms.AddRandomGuidanced method)
(monai.apps.MedNISTDataset method)
(monai.data.ArrayDataset method)
(monai.data.ImageDataset method)
(monai.data.SmartCacheDataset method)
(monai.transforms.AddExtremePointsChannel method)
(monai.transforms.AddExtremePointsChanneld method)
(monai.transforms.Compose method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAdjustContrast method)
(monai.transforms.RandAdjustContrastd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.RandAffineGrid method)
(monai.transforms.RandAxisFlip method)
(monai.transforms.RandAxisFlipd method)
(monai.transforms.RandBiasField method)
(monai.transforms.RandBiasFieldd method)
(monai.transforms.RandCropByPosNegLabel method)
(monai.transforms.RandCropByPosNegLabeld method)
(monai.transforms.RandDeformGrid method)
(monai.transforms.RandGaussianNoise method)
(monai.transforms.RandGaussianNoised method)
(monai.transforms.RandGaussianSharpen method)
(monai.transforms.RandGaussianSharpend method)
(monai.transforms.RandGaussianSmooth method)
(monai.transforms.RandGaussianSmoothd method)
(monai.transforms.RandHistogramShift method)
(monai.transforms.RandHistogramShiftd method)
(monai.transforms.RandLambdad method)
(monai.transforms.Randomizable method)
(monai.transforms.RandomizableTransform method)
(monai.transforms.RandRotate method)
(monai.transforms.RandRotate90 method)
(monai.transforms.RandRotate90d method)
(monai.transforms.RandRotated method)
(monai.transforms.RandScaleIntensity method)
(monai.transforms.RandScaleIntensityd method)
(monai.transforms.RandShiftIntensity method)
(monai.transforms.RandShiftIntensityd method)
(monai.transforms.RandSpatialCrop method)
(monai.transforms.RandSpatialCropd method)
(monai.transforms.RandSpatialCropSamples method)
(monai.transforms.RandSpatialCropSamplesd method)
(monai.transforms.RandStdShiftIntensity method)
(monai.transforms.RandStdShiftIntensityd method)
(monai.transforms.RandWeightedCrop method)
(monai.transforms.RandWeightedCropd method)
(monai.transforms.RandZoom method)
(monai.transforms.RandZoomd method)
RandRotate (class in monai.transforms)
RandRotate90 (class in monai.transforms)
RandRotate90d (class in monai.transforms)
RandRotated (class in monai.transforms)
RandScaleIntensity (class in monai.transforms)
RandScaleIntensityd (class in monai.transforms)
RandShiftIntensity (class in monai.transforms)
RandShiftIntensityd (class in monai.transforms)
RandSpatialCrop (class in monai.transforms)
RandSpatialCropd (class in monai.transforms)
RandSpatialCropSamples (class in monai.transforms)
RandSpatialCropSamplesd (class in monai.transforms)
RandStdShiftIntensity (class in monai.transforms)
RandStdShiftIntensityd (class in monai.transforms)
RandTorchVisiond (class in monai.transforms)
RandWeightedCrop (class in monai.transforms)
RandWeightedCropd (class in monai.transforms)
RandZoom (class in monai.transforms)
RandZoomd (class in monai.transforms)
read() (monai.data.ITKReader method)
(monai.data.NibabelReader method)
(monai.data.NumpyReader method)
(monai.data.PILReader method)
(monai.data.WSIReader method)
rectify_header_sform_qform() (in module monai.data.utils)
Refine (class in monai.networks.blocks)
register() (monai.transforms.LoadImage method)
(monai.transforms.LoadImaged method)
RegistrationDownSampleBlock (class in monai.networks.blocks)
RegistrationExtractionBlock (class in monai.networks.blocks)
RegistrationResidualConvBlock (class in monai.networks.blocks)
Regressor (class in monai.networks.nets)
RegUNet (class in monai.networks.nets)
RepeatChannel (class in monai.transforms)
RepeatChanneld (class in monai.transforms)
Resample (class in monai.transforms)
ResBlock (class in monai.networks.blocks)
rescale_array() (in module monai.transforms.utils)
rescale_array_int_max() (in module monai.transforms.utils)
rescale_instance_array() (in module monai.transforms.utils)
reset() (monai.handlers.IterationMetric method)
ResidualSELayer (class in monai.networks.blocks)
ResidualUnit (class in monai.networks.blocks)
Resize (class in monai.transforms)
resize_center() (in module monai.transforms.utils)
Resized (class in monai.transforms)
ResizeGuidanced (class in monai.apps.deepgrow.transforms)
ResizeWithPadOrCrop (class in monai.transforms)
ResizeWithPadOrCropd (class in monai.transforms)
resolve_name() (in module monai.utils.aliases)
RestoreLabeld (class in monai.apps.deepgrow.transforms)
ROCAUC (class in monai.handlers)
Rotate (class in monai.transforms)
Rotate90 (class in monai.transforms)
Rotate90d (class in monai.transforms)
Rotated (class in monai.transforms)
run() (monai.engines.Evaluator method)
(monai.engines.Trainer method)
(monai.engines.workflow.Workflow method)
S
SaliencyInferer (class in monai.inferers)
same_padding() (in module monai.networks.layers.convutils)
save() (monai.data.NiftiSaver method)
(monai.data.PNGSaver method)
save_batch() (monai.data.NiftiSaver method)
(monai.data.PNGSaver method)
save_prob_map() (monai.apps.pathology.handlers.ProbMapProducer method)
SaveImage (class in monai.transforms)
SaveImaged (class in monai.transforms)
SavitzkyGolayFilter (class in monai.networks.layers)
SavitzkyGolaySmooth (class in monai.transforms)
ScaleIntensity (class in monai.transforms)
ScaleIntensityd (class in monai.transforms)
ScaleIntensityRange (class in monai.transforms)
ScaleIntensityRanged (class in monai.transforms)
ScaleIntensityRangePercentiles (class in monai.transforms)
ScaleIntensityRangePercentilesd (class in monai.transforms)
SEBlock (class in monai.networks.blocks)
SEBottleneck (class in monai.networks.blocks)
SegmentationSaver (class in monai.handlers)
SegResNet (class in monai.networks.nets)
SegResNetVAE (class in monai.networks.nets)
select_cross_validation_folds() (in module monai.data.utils)
SelectItemsd (class in monai.transforms)
SENet (class in monai.networks.nets)
SEResNetBottleneck (class in monai.networks.blocks)
SEResNeXtBottleneck (class in monai.networks.blocks)
set_determinism() (in module monai.utils.misc)
set_random_state() (monai.transforms.Compose method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.Randomizable method)
(monai.transforms.RandSpatialCropSamples method)
(monai.transforms.RandSpatialCropSamplesd method)
set_rnd() (in module monai.data.utils)
set_swish() (monai.networks.nets.EfficientNet method)
set_trainer() (monai.handlers.EarlyStopHandler method)
set_validator() (monai.handlers.ValidationHandler method)
ShiftIntensity (class in monai.transforms)
ShiftIntensityd (class in monai.transforms)
shutdown() (monai.data.SmartCacheDataset method)
SimpleASPP (class in monai.networks.blocks)
SimpleInferer (class in monai.inferers)
SimulateDelay (class in monai.transforms)
SimulateDelayd (class in monai.transforms)
SkipConnection (class in monai.networks.layers)
sliding_window_inference() (in module monai.inferers)
SlidingWindowInferer (class in monai.inferers)
SmartCacheDataset (class in monai.data)
SmartCacheHandler (class in monai.handlers)
SmartCachePatchWSIDataset (class in monai.apps.pathology.datasets)
sorted_dict() (in module monai.data.utils)
Spacing (class in monai.transforms)
Spacingd (class in monai.transforms)
SpatialCrop (class in monai.transforms)
SpatialCropd (class in monai.transforms)
SpatialCropForegroundd (class in monai.apps.deepgrow.transforms)
SpatialCropGuidanced (class in monai.apps.deepgrow.transforms)
SpatialPad (class in monai.transforms)
SpatialPadd (class in monai.transforms)
split_args() (in module monai.networks.layers)
SplitChannel (class in monai.transforms)
SplitChanneld (class in monai.transforms)
SqueezeDim (class in monai.transforms)
SqueezeDimd (class in monai.transforms)
star_zip_with() (in module monai.utils.misc)
start() (monai.data.SmartCacheDataset method)
started() (monai.handlers.SmartCacheHandler method)
StatsHandler (class in monai.handlers)
StdShiftIntensity (class in monai.transforms)
StdShiftIntensityd (class in monai.transforms)
step() (monai.optimizers.Novograd method)
SubpixelUpsample (class in monai.networks.blocks)
SubpixelUpSample (in module monai.networks.blocks)
Subpixelupsample (in module monai.networks.blocks)
SupervisedEvaluator (class in monai.engines)
SupervisedTrainer (class in monai.engines)
SurfaceDistance (class in monai.handlers)
SurfaceDistanceMetric (class in monai.metrics)
Swish (class in monai.networks.blocks)
T
TensorBoardHandler (class in monai.handlers)
TensorBoardImageHandler (class in monai.handlers)
TensorBoardStatsHandler (class in monai.handlers)
TestTimeAugmentation (class in monai.data)
ThreadBuffer (class in monai.data)
ThresholdIntensity (class in monai.transforms)
ThresholdIntensityd (class in monai.transforms)
to_affine_nd() (in module monai.data.utils)
to_kwargs() (in module monai.transforms.adaptors)
to_norm_affine() (in module monai.networks.utils)
ToNumpy (class in monai.transforms)
ToNumpyd (class in monai.transforms)
torch_profiler_full() (in module monai.utils.profiling)
torch_profiler_time_cpu_gpu() (in module monai.utils.profiling)
torch_profiler_time_end_to_end() (in module monai.utils.profiling)
TorchVision (class in monai.transforms)
TorchVisiond (class in monai.transforms)
TorchVisionFullyConvModel (class in monai.networks.nets)
ToTensor (class in monai.transforms)
ToTensord (class in monai.transforms)
train_mode() (in module monai.networks.utils)
Trainer (class in monai.engines)
Transform (class in monai.transforms)
TransformInverter (class in monai.handlers)
Transpose (class in monai.transforms)
TverskyLoss (class in monai.losses)
U
UNet (class in monai.networks.nets)
Unet (in module monai.networks.nets)
unet (in module monai.networks.nets)
UnetBasicBlock (class in monai.networks.blocks)
UnetResBlock (class in monai.networks.blocks)
UnetUpBlock (class in monai.networks.blocks)
update() (monai.handlers.IterationMetric method)
update_cache() (monai.data.SmartCacheDataset method)
UpSample (class in monai.networks.blocks)
Upsample (in module monai.networks.blocks)
V
ValidationHandler (class in monai.handlers)
VarAutoEncoder (class in monai.networks.nets)
verify_suffix() (monai.data.ITKReader method)
(monai.data.NibabelReader method)
(monai.data.NumpyReader method)
(monai.data.PILReader method)
(monai.data.WSIReader method)
VNet (class in monai.networks.nets)
VoteEnsemble (class in monai.transforms)
VoteEnsembled (class in monai.transforms)
W
Warp (class in monai.networks.blocks)
wasserstein_distance_map() (monai.losses.GeneralizedWassersteinDiceLoss method)
weighted_patch_samples() (in module monai.transforms.utils)
worker_init_fn() (in module monai.data.utils)
Workflow (class in monai.engines.workflow)
write_nifti() (in module monai.data)
write_png() (in module monai.data)
WSIReader (class in monai.data)
Z
zero_margins() (in module monai.transforms.utils)
zip_with() (in module monai.utils.misc)
ZipDataset (class in monai.data)
Zoom (class in monai.transforms)
zoom_affine() (in module monai.data.utils)
Zoomd (class in monai.transforms)
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