0.2.0
Feature highlights
Modules in v0.2.0
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Applications
Transforms
Loss functions
Network architectures
Metrics
Data
Engines
Inference methods
Event handlers
Visualizations
Utilities
Installation
Installation guide
MONAI
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Z
_
__call__() (monai.transforms.Activations method)
(monai.transforms.Activationsd method)
(monai.transforms.AddChannel method)
(monai.transforms.AddChanneld method)
(monai.transforms.AdjustContrast method)
(monai.transforms.AdjustContrastd method)
(monai.transforms.Affine method)
(monai.transforms.AffineGrid method)
(monai.transforms.AsChannelFirst method)
(monai.transforms.AsChannelFirstd method)
(monai.transforms.AsChannelLast method)
(monai.transforms.AsChannelLastd method)
(monai.transforms.AsDiscrete method)
(monai.transforms.AsDiscreted method)
(monai.transforms.BorderPad method)
(monai.transforms.BorderPadd method)
(monai.transforms.CastToType method)
(monai.transforms.CastToTyped method)
(monai.transforms.CenterSpatialCrop method)
(monai.transforms.CenterSpatialCropd method)
(monai.transforms.Compose method)
(monai.transforms.ConcatItemsd method)
(monai.transforms.CopyItemsd method)
(monai.transforms.CropForeground method)
(monai.transforms.CropForegroundd method)
(monai.transforms.DataStats method)
(monai.transforms.DataStatsd method)
(monai.transforms.DeleteItemsd method)
(monai.transforms.DivisiblePad method)
(monai.transforms.DivisiblePadd method)
(monai.transforms.Flip method)
(monai.transforms.Flipd method)
(monai.transforms.Identity method)
(monai.transforms.Identityd method)
(monai.transforms.KeepLargestConnectedComponent method)
(monai.transforms.KeepLargestConnectedComponentd method)
(monai.transforms.LabelToContour method)
(monai.transforms.LabelToContourd method)
(monai.transforms.Lambda method)
(monai.transforms.Lambdad method)
(monai.transforms.LoadNifti method)
(monai.transforms.LoadNiftid method)
(monai.transforms.LoadPNG method)
(monai.transforms.LoadPNGd method)
(monai.transforms.MapTransform method)
(monai.transforms.NormalizeIntensity method)
(monai.transforms.NormalizeIntensityd method)
(monai.transforms.Orientation method)
(monai.transforms.Orientationd method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAdjustContrast method)
(monai.transforms.RandAdjustContrastd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.RandAffineGrid method)
(monai.transforms.RandCropByPosNegLabel method)
(monai.transforms.RandCropByPosNegLabeld method)
(monai.transforms.RandDeformGrid method)
(monai.transforms.RandFlip method)
(monai.transforms.RandFlipd method)
(monai.transforms.RandGaussianNoise method)
(monai.transforms.RandGaussianNoised method)
(monai.transforms.RandRotate method)
(monai.transforms.RandRotate90 method)
(monai.transforms.RandRotate90d method)
(monai.transforms.RandRotated method)
(monai.transforms.RandScaleIntensity method)
(monai.transforms.RandScaleIntensityd method)
(monai.transforms.RandShiftIntensity method)
(monai.transforms.RandShiftIntensityd method)
(monai.transforms.RandSpatialCrop method)
(monai.transforms.RandSpatialCropd method)
(monai.transforms.RandSpatialCropSamples method)
(monai.transforms.RandSpatialCropSamplesd method)
(monai.transforms.RandZoom method)
(monai.transforms.RandZoomd method)
(monai.transforms.RepeatChannel method)
(monai.transforms.RepeatChanneld method)
(monai.transforms.Resample method)
(monai.transforms.Resize method)
(monai.transforms.Resized method)
(monai.transforms.Rotate method)
(monai.transforms.Rotate90 method)
(monai.transforms.Rotate90d method)
(monai.transforms.Rotated method)
(monai.transforms.ScaleIntensity method)
(monai.transforms.ScaleIntensityd method)
(monai.transforms.ScaleIntensityRange method)
(monai.transforms.ScaleIntensityRanged method)
(monai.transforms.ScaleIntensityRangePercentiles method)
(monai.transforms.ScaleIntensityRangePercentilesd method)
(monai.transforms.ShiftIntensity method)
(monai.transforms.ShiftIntensityd method)
(monai.transforms.SimulateDelay method)
(monai.transforms.SimulateDelayd method)
(monai.transforms.Spacing method)
(monai.transforms.Spacingd method)
(monai.transforms.SpatialCrop method)
(monai.transforms.SpatialCropd method)
(monai.transforms.SpatialPad method)
(monai.transforms.SpatialPadd method)
(monai.transforms.SplitChannel method)
(monai.transforms.SplitChanneld method)
(monai.transforms.SqueezeDim method)
(monai.transforms.SqueezeDimd method)
(monai.transforms.ThresholdIntensity method)
(monai.transforms.ThresholdIntensityd method)
(monai.transforms.ToNumpy method)
(monai.transforms.ToNumpyd method)
(monai.transforms.ToTensor method)
(monai.transforms.ToTensord method)
(monai.transforms.Transform method)
(monai.transforms.Transpose method)
(monai.transforms.Zoom method)
(monai.transforms.Zoomd method)
A
Activations (class in monai.transforms)
Activationsd (class in monai.transforms)
adaptor() (in module monai.transforms.adaptors)
add_animated_gif() (in module monai.visualize.img2tensorboard)
add_animated_gif_no_channels() (in module monai.visualize.img2tensorboard)
add_factory_callable() (monai.networks.layers.factories.LayerFactory method)
AddChannel (class in monai.transforms)
AddChanneld (class in monai.transforms)
AdjustContrast (class in monai.transforms)
AdjustContrastd (class in monai.transforms)
Affine (class in monai.transforms)
AffineGrid (class in monai.transforms)
AffineTransform (class in monai.networks.layers)
alias() (in module monai.utils.aliases)
apply_alias() (in module monai.transforms.adaptors)
apply_transform() (in module monai.transforms.utils)
ArrayDataset (class in monai.data)
AsChannelFirst (class in monai.transforms)
AsChannelFirstd (class in monai.transforms)
AsChannelLast (class in monai.transforms)
AsChannelLastd (class in monai.transforms)
AsDiscrete (class in monai.transforms)
AsDiscreted (class in monai.transforms)
attach() (monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardStatsHandler method)
B
BorderPad (class in monai.transforms)
BorderPadd (class in monai.transforms)
C
CacheDataset (class in monai.data)
calculate_out_shape() (in module monai.networks.layers.convutils)
CastToType (class in monai.transforms)
CastToTyped (class in monai.transforms)
CenterSpatialCrop (class in monai.transforms)
CenterSpatialCropd (class in monai.transforms)
ChannelSELayer (class in monai.networks.blocks)
check_md5() (in module monai.apps)
CheckpointLoader (class in monai.handlers)
CheckpointSaver (class in monai.handlers)
ClassificationSaver (class in monai.handlers)
Classifier (class in monai.networks.nets)
completed() (monai.handlers.CheckpointSaver method)
Compose (class in monai.transforms)
compute() (monai.handlers.MeanDice method)
(monai.handlers.ROCAUC method)
compute_importance_map() (in module monai.data.utils)
compute_meandice() (in module monai.metrics)
compute_roc_auc() (in module monai.metrics)
compute_shape_offset() (in module monai.data.utils)
ConcatItemsd (class in monai.transforms)
Convolution (class in monai.networks.blocks)
CopyItemsd (class in monai.transforms)
copypaste_arrays() (in module monai.transforms.utils)
correct_nifti_header_if_necessary() (in module monai.data.utils)
create_control_grid() (in module monai.transforms.utils)
create_file_basename() (in module monai.data.utils)
create_grid() (in module monai.transforms.utils)
create_multigpu_supervised_evaluator() (in module monai.engines.multi_gpu_supervised_trainer)
create_multigpu_supervised_trainer() (in module monai.engines.multi_gpu_supervised_trainer)
create_rotate() (in module monai.transforms.utils)
create_scale() (in module monai.transforms.utils)
create_shear() (in module monai.transforms.utils)
create_test_image_2d() (in module monai.data.synthetic)
create_test_image_3d() (in module monai.data.synthetic)
create_translate() (in module monai.transforms.utils)
Critic (class in monai.networks.nets)
CropForeground (class in monai.transforms)
CropForegroundd (class in monai.transforms)
D
DataLoader() (in module monai.data)
Dataset (class in monai.data)
DataStats (class in monai.transforms)
DataStatsd (class in monai.transforms)
DecathlonDataset (class in monai.apps)
DeleteItemsd (class in monai.transforms)
dense_patch_slices() (in module monai.data.utils)
DenseNet (class in monai.networks.nets)
densenet121() (in module monai.networks.nets)
densenet169() (in module monai.networks.nets)
densenet201() (in module monai.networks.nets)
densenet264() (in module monai.networks.nets)
Dice (in module monai.losses)
dice (in module monai.losses)
DiceLoss (class in monai.losses)
DiceMetric (class in monai.metrics)
Discriminator (class in monai.networks.nets)
DivisiblePad (class in monai.transforms)
DivisiblePadd (class in monai.transforms)
download_and_extract() (in module monai.apps)
download_url() (in module monai.apps)
E
ensure_tuple() (in module monai.utils.misc)
ensure_tuple_rep() (in module monai.utils.misc)
ensure_tuple_size() (in module monai.utils.misc)
epoch_completed() (monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardStatsHandler method)
Evaluator (class in monai.engines)
exact_version() (in module monai.utils.module)
exception_raised() (monai.handlers.CheckpointSaver method)
(monai.handlers.StatsHandler method)
export() (in module monai.utils.module)
extractall() (in module monai.apps)
F
factory_function() (monai.networks.layers.factories.LayerFactory method)
fall_back_tuple() (in module monai.utils.misc)
first() (in module monai.utils.misc)
Flatten (class in monai.networks.layers)
Flip (class in monai.transforms)
Flipd (class in monai.transforms)
FocalLoss (class in monai.losses)
forward() (monai.losses.DiceLoss method)
(monai.losses.FocalLoss method)
(monai.losses.GeneralizedDiceLoss method)
(monai.losses.MaskedDiceLoss method)
(monai.losses.TverskyLoss method)
(monai.networks.blocks.ChannelSELayer method)
(monai.networks.blocks.MaxAvgPool method)
(monai.networks.blocks.ResidualSELayer method)
(monai.networks.blocks.ResidualUnit method)
(monai.networks.blocks.SimpleASPP method)
(monai.networks.blocks.UpSample method)
(monai.networks.layers.AffineTransform method)
(monai.networks.layers.Flatten method)
(monai.networks.layers.GaussianFilter method)
(monai.networks.layers.SkipConnection method)
(monai.networks.nets.Critic method)
(monai.networks.nets.DenseNet method)
(monai.networks.nets.Generator method)
(monai.networks.nets.HighResBlock method)
(monai.networks.nets.HighResNet method)
(monai.networks.nets.Regressor method)
(monai.networks.nets.UNet method)
G
gaussian_1d() (in module monai.networks.layers.convutils)
GaussianFilter (class in monai.networks.layers)
generalized_dice (in module monai.losses)
GeneralizedDiceLoss (class in monai.losses)
generate_pos_neg_label_crop_centers() (in module monai.transforms.utils)
generate_spatial_bounding_box() (in module monai.transforms.utils)
Generator (class in monai.networks.nets)
get_config_values() (in module monai.config.deviceconfig)
get_constructor() (monai.networks.layers.factories.LayerFactory method)
get_largest_connected_component_mask() (in module monai.transforms.utils)
get_optional_config_values() (in module monai.config.deviceconfig)
get_random_patch() (in module monai.data.utils)
get_torch_version_tuple() (in module monai.config.deviceconfig)
get_valid_patch_size() (in module monai.data.utils)
GridPatchDataset (class in monai.data)
H
HighResBlock (class in monai.networks.nets)
HighResNet (class in monai.networks.nets)
I
Identity (class in monai.transforms)
Identityd (class in monai.transforms)
img_bounds() (in module monai.transforms.utils)
in_bounds() (in module monai.transforms.utils)
Inferer (class in monai.inferers)
interval_completed() (monai.handlers.CheckpointSaver method)
is_empty() (in module monai.transforms.utils)
issequenceiterable() (in module monai.utils.misc)
iter_patch() (in module monai.data.utils)
iter_patch_slices() (in module monai.data.utils)
iteration_completed() (monai.handlers.StatsHandler method)
(monai.handlers.TensorBoardStatsHandler method)
K
KeepLargestConnectedComponent (class in monai.transforms)
KeepLargestConnectedComponentd (class in monai.transforms)
L
LabelToContour (class in monai.transforms)
LabelToContourd (class in monai.transforms)
Lambda (class in monai.transforms)
Lambdad (class in monai.transforms)
LayerFactory (class in monai.networks.layers.factories)
list_data_collate() (in module monai.data.utils)
load_decathalon_datalist() (in module monai.data)
load_submodules() (in module monai.utils.module)
LoadNifti (class in monai.transforms)
LoadNiftid (class in monai.transforms)
LoadPNG (class in monai.transforms)
LoadPNGd (class in monai.transforms)
LrScheduleHandler (class in monai.handlers)
M
make_animated_gif_summary() (in module monai.visualize.img2tensorboard)
MapTransform (class in monai.transforms)
MaskedDiceLoss (class in monai.losses)
MaxAvgPool (class in monai.networks.blocks)
MeanDice (class in monai.handlers)
MedNISTDataset (class in monai.apps)
MetricLogger (class in monai.handlers)
metrics_completed() (monai.handlers.CheckpointSaver method)
min_version() (in module monai.utils.module)
monai (module)
monai.config.deviceconfig (module)
monai.data.synthetic (module)
monai.data.utils (module)
monai.engines.multi_gpu_supervised_trainer (module)
monai.engines.workflow (module)
monai.losses (module)
monai.networks.blocks (module)
monai.networks.layers.convutils (module)
monai.networks.layers.factories (module)
monai.networks.utils (module)
monai.transforms (module)
monai.transforms.adaptors (module)
monai.transforms.utils (module)
monai.utils.aliases (module)
monai.utils.misc (module)
monai.utils.module (module)
monai.visualize.img2tensorboard (module)
N
names() (monai.networks.layers.factories.LayerFactory property)
NiftiDataset (class in monai.data)
NiftiSaver (class in monai.data)
normal_init() (in module monai.networks.utils)
normalize_transform() (in module monai.networks.utils)
NormalizeIntensity (class in monai.transforms)
NormalizeIntensityd (class in monai.transforms)
O
one_hot() (in module monai.networks.utils)
optional_import() (in module monai.utils.module)
Orientation (class in monai.transforms)
Orientationd (class in monai.transforms)
P
PersistentDataset (class in monai.data)
plot_2d_or_3d_image() (in module monai.visualize.img2tensorboard)
PNGSaver (class in monai.data)
predict_segmentation() (in module monai.networks.utils)
print_config() (in module monai.config.deviceconfig)
progress_bar() (in module monai.utils.misc)
R
Rand2DElastic (class in monai.transforms)
Rand2DElasticd (class in monai.transforms)
Rand3DElastic (class in monai.transforms)
Rand3DElasticd (class in monai.transforms)
rand_choice() (in module monai.transforms.utils)
RandAdjustContrast (class in monai.transforms)
RandAdjustContrastd (class in monai.transforms)
RandAffine (class in monai.transforms)
RandAffined (class in monai.transforms)
RandAffineGrid (class in monai.transforms)
RandCropByPosNegLabel (class in monai.transforms)
RandCropByPosNegLabeld (class in monai.transforms)
RandDeformGrid (class in monai.transforms)
RandFlip (class in monai.transforms)
RandFlipd (class in monai.transforms)
RandGaussianNoise (class in monai.transforms)
RandGaussianNoised (class in monai.transforms)
Randomizable (class in monai.transforms)
randomize() (monai.apps.DecathlonDataset method)
(monai.apps.MedNISTDataset method)
(monai.data.ArrayDataset method)
(monai.data.NiftiDataset method)
(monai.transforms.Compose method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAdjustContrast method)
(monai.transforms.RandAdjustContrastd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.RandAffineGrid method)
(monai.transforms.RandCropByPosNegLabel method)
(monai.transforms.RandCropByPosNegLabeld method)
(monai.transforms.RandDeformGrid method)
(monai.transforms.RandFlip method)
(monai.transforms.RandFlipd method)
(monai.transforms.RandGaussianNoise method)
(monai.transforms.RandGaussianNoised method)
(monai.transforms.Randomizable method)
(monai.transforms.RandRotate method)
(monai.transforms.RandRotate90 method)
(monai.transforms.RandRotate90d method)
(monai.transforms.RandRotated method)
(monai.transforms.RandScaleIntensity method)
(monai.transforms.RandScaleIntensityd method)
(monai.transforms.RandShiftIntensity method)
(monai.transforms.RandShiftIntensityd method)
(monai.transforms.RandSpatialCrop method)
(monai.transforms.RandSpatialCropd method)
(monai.transforms.RandSpatialCropSamples method)
(monai.transforms.RandSpatialCropSamplesd method)
(monai.transforms.RandZoom method)
(monai.transforms.RandZoomd method)
RandRotate (class in monai.transforms)
RandRotate90 (class in monai.transforms)
RandRotate90d (class in monai.transforms)
RandRotated (class in monai.transforms)
RandScaleIntensity (class in monai.transforms)
RandScaleIntensityd (class in monai.transforms)
RandShiftIntensity (class in monai.transforms)
RandShiftIntensityd (class in monai.transforms)
RandSpatialCrop (class in monai.transforms)
RandSpatialCropd (class in monai.transforms)
RandSpatialCropSamples (class in monai.transforms)
RandSpatialCropSamplesd (class in monai.transforms)
RandZoom (class in monai.transforms)
RandZoomd (class in monai.transforms)
rectify_header_sform_qform() (in module monai.data.utils)
Regressor (class in monai.networks.nets)
RepeatChannel (class in monai.transforms)
RepeatChanneld (class in monai.transforms)
Resample (class in monai.transforms)
rescale_array() (in module monai.transforms.utils)
rescale_array_int_max() (in module monai.transforms.utils)
rescale_instance_array() (in module monai.transforms.utils)
reset() (monai.handlers.MeanDice method)
(monai.handlers.ROCAUC method)
ResidualSELayer (class in monai.networks.blocks)
ResidualUnit (class in monai.networks.blocks)
Resize (class in monai.transforms)
resize_center() (in module monai.transforms.utils)
Resized (class in monai.transforms)
resolve_name() (in module monai.utils.aliases)
ROCAUC (class in monai.handlers)
Rotate (class in monai.transforms)
Rotate90 (class in monai.transforms)
Rotate90d (class in monai.transforms)
Rotated (class in monai.transforms)
run() (monai.engines.Evaluator method)
(monai.engines.Trainer method)
(monai.engines.workflow.Workflow method)
S
same_padding() (in module monai.networks.layers.convutils)
save() (monai.data.NiftiSaver method)
(monai.data.PNGSaver method)
save_batch() (monai.data.NiftiSaver method)
(monai.data.PNGSaver method)
ScaleIntensity (class in monai.transforms)
ScaleIntensityd (class in monai.transforms)
ScaleIntensityRange (class in monai.transforms)
ScaleIntensityRanged (class in monai.transforms)
ScaleIntensityRangePercentiles (class in monai.transforms)
ScaleIntensityRangePercentilesd (class in monai.transforms)
SegmentationSaver (class in monai.handlers)
set_determinism() (in module monai.utils.misc)
set_random_state() (monai.transforms.Compose method)
(monai.transforms.Rand2DElastic method)
(monai.transforms.Rand2DElasticd method)
(monai.transforms.Rand3DElastic method)
(monai.transforms.Rand3DElasticd method)
(monai.transforms.RandAffine method)
(monai.transforms.RandAffined method)
(monai.transforms.Randomizable method)
ShiftIntensity (class in monai.transforms)
ShiftIntensityd (class in monai.transforms)
SimpleASPP (class in monai.networks.blocks)
SimpleInferer (class in monai.inferers)
SimulateDelay (class in monai.transforms)
SimulateDelayd (class in monai.transforms)
SkipConnection (class in monai.networks.layers)
sliding_window_inference() (in module monai.inferers)
SlidingWindowInferer (class in monai.inferers)
Spacing (class in monai.transforms)
Spacingd (class in monai.transforms)
SpatialCrop (class in monai.transforms)
SpatialCropd (class in monai.transforms)
SpatialPad (class in monai.transforms)
SpatialPadd (class in monai.transforms)
SplitChannel (class in monai.transforms)
SplitChanneld (class in monai.transforms)
SqueezeDim (class in monai.transforms)
SqueezeDimd (class in monai.transforms)
star_zip_with() (in module monai.utils.misc)
StatsHandler (class in monai.handlers)
SupervisedEvaluator (class in monai.engines)
SupervisedTrainer (class in monai.engines)
T
TensorBoardStatsHandler (class in monai.handlers)
ThresholdIntensity (class in monai.transforms)
ThresholdIntensityd (class in monai.transforms)
to_affine_nd() (in module monai.data.utils)
to_kwargs() (in module monai.transforms.adaptors)
to_norm_affine() (in module monai.networks.utils)
ToNumpy (class in monai.transforms)
ToNumpyd (class in monai.transforms)
ToTensor (class in monai.transforms)
ToTensord (class in monai.transforms)
Trainer (class in monai.engines)
Transform (class in monai.transforms)
Transpose (class in monai.transforms)
TverskyLoss (class in monai.losses)
U
UNet (class in monai.networks.nets)
Unet (in module monai.networks.nets)
unet (in module monai.networks.nets)
update() (monai.handlers.MeanDice method)
(monai.handlers.ROCAUC method)
UpSample (class in monai.networks.blocks)
V
ValidationHandler (class in monai.handlers)
W
worker_init_fn() (in module monai.data.utils)
Workflow (class in monai.engines.workflow)
write_nifti() (in module monai.data)
write_png() (in module monai.data)
Z
zero_margins() (in module monai.transforms.utils)
zip_with() (in module monai.utils.misc)
ZipDataset (class in monai.data)
Zoom (class in monai.transforms)
zoom_affine() (in module monai.data.utils)
Zoomd (class in monai.transforms)
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